Hvir010801.1
Basic Information
- Insect
- Heliothis virescens
- Gene Symbol
- -
- Assembly
- GCA_002382865.1
- Location
- NWSH01005026.1:5513-7973[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0017 0.1 12.9 2.0 2 23 200 221 199 221 0.94 2 11 0.0002 0.012 15.8 0.3 1 23 228 250 228 250 0.96 3 11 0.18 11 6.5 3.0 1 23 255 277 255 277 0.94 4 11 0.014 0.85 10.0 1.6 2 23 284 304 283 304 0.95 5 11 0.098 5.9 7.3 2.1 1 19 309 327 309 332 0.89 6 11 0.0012 0.071 13.4 1.2 1 23 336 358 336 358 0.99 7 11 4.6e-05 0.0027 17.8 1.3 1 23 364 386 364 386 0.98 8 11 0.00067 0.04 14.1 0.7 1 23 392 414 392 414 0.98 9 11 0.0011 0.067 13.4 1.0 1 23 420 442 420 442 0.98 10 11 0.00015 0.0089 16.2 0.4 1 23 448 471 448 471 0.97 11 11 6.4e-05 0.0038 17.3 2.5 2 23 478 501 477 501 0.93
Sequence Information
- Coding Sequence
- ATGGCCAGCAGAATACTATTTGAAGAAGAAGTTTCAGGAAACaaggacaaaaatattaaaatgatgcAAGAACACACAAATCAGGATCAGAGTATTCAAGACACTAATAATTTAGATAACAATGAACAAACTGACATACATAATGACAGTCAAACTCAAGAAACAGTCACAAGAGATgagaaaataaatgataaaacaCCAAATCACCAAGTTGATAATAGTACAGCAAATATAGCAAATGTTATTCAAGAAAATTCAACGAATAACACTTTAACTGACATGGATCCAGCTCATAGCAACAGCTTAACAACTATTCTCCCTGAAGTTCCTGTTGGACAAAGTGGTATTACCCCAAGCTCAGCGCAAGGTCCTATAgtaaaggttaaaaaaaaatctgagtTGGAACTCCTTGGTGTAGACGTGAAGGCAATGGAGGAGTGTGACACACAGTTTGATGCATTTGAAGCTGACAGACAGATTTGTAGGAAGTATAAATTGAGGAAGATGGAACAACAAATATCCTACAAAGAACCTGCCAACTTTCCACTGAAGCGCTCCATCAGCTCTGAAGAACTTTCAGACGAGCCTCCATCTCTGACGTGTCCCGTCTGCAACCACACCTTCGACTCCTTACGAGCTCTCAAGGTGCACGAGCATTATCATGGCGTCACCACCAAAGAGTTCACCTGCTCGATATGTTCAGAAAACTTCAAAAAGAATGCAGATTTATTGGCCCATAAGGTCATCCATAGCGGGGAATCTTTTGTATGTCAGCGGTGTAAGCTGGCCTTTTCAGACCACTGTGATTTCCTCCTACATAATGCCATACATGCTGGGACTTCAGACATCAAATGTCCTGAATGTGGACTGCTCTATAATAGAAGAAGTTACTACCACCACATTAAGacacattttagtaaaaaacataaatgtccGAAATGTTCTTTTGTGActaattttgaagaaaacttaGAAAGCCATGATAAGAAAATGCATAGCAGTACATATGAGTGTGTAGAGTGTCGTAGGACGTTGAAATCCAAAGCACAATTTGATTATCACATGAGCACGCACACTGGGGTTAAAAAACATCAGTGTTTGTACTGCGGGAAGGGTTTTGCAACTCAAAATCAAAGGATTGTTCATACTAGAGTACATACAGGAGAGAAGCCTTATTCCTGCGATATCTGTGGATACAGAGCTTCTCAGACAACTGACATTAAACGCCACAAAATGACACATGAGACAGAAAAGAAATTCTCGTGTGAAGTGTGCTCCAAGAAGTTTTTACGGAAAGAGTCTCTGCTTGGTCACATGActtctcatacaaagaaggATATGTTTGAGTGTCCGGCGTGCGATCATAGATATACGAGCTCTGTGGGGCTGAGGGTACACATTATGATGAAGCACACCAACGAGCGACCCGTGGAGTGCACGTTTTGTAacaaaaagtttgtaaataacAATCAGTACAGGAAGCACACGAGGACTAAGATACATAAGCGACGTGCGTATGGCCATATGAAACTAAAAGGTGATTTCTGTGATGACTGA
- Protein Sequence
- MASRILFEEEVSGNKDKNIKMMQEHTNQDQSIQDTNNLDNNEQTDIHNDSQTQETVTRDEKINDKTPNHQVDNSTANIANVIQENSTNNTLTDMDPAHSNSLTTILPEVPVGQSGITPSSAQGPIVKVKKKSELELLGVDVKAMEECDTQFDAFEADRQICRKYKLRKMEQQISYKEPANFPLKRSISSEELSDEPPSLTCPVCNHTFDSLRALKVHEHYHGVTTKEFTCSICSENFKKNADLLAHKVIHSGESFVCQRCKLAFSDHCDFLLHNAIHAGTSDIKCPECGLLYNRRSYYHHIKTHFSKKHKCPKCSFVTNFEENLESHDKKMHSSTYECVECRRTLKSKAQFDYHMSTHTGVKKHQCLYCGKGFATQNQRIVHTRVHTGEKPYSCDICGYRASQTTDIKRHKMTHETEKKFSCEVCSKKFLRKESLLGHMTSHTKKDMFECPACDHRYTSSVGLRVHIMMKHTNERPVECTFCNKKFVNNNQYRKHTRTKIHKRRAYGHMKLKGDFCDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -