Hvir004611.1
Basic Information
- Insect
- Heliothis virescens
- Gene Symbol
- -
- Assembly
- GCA_002382865.1
- Location
- NWSH01000055.1:264935-267980[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.54 32 5.0 0.8 1 20 177 196 177 198 0.95 2 20 1.8e-05 0.0011 19.1 1.9 2 23 205 226 204 226 0.97 3 20 0.17 10 6.6 3.2 2 23 230 251 229 251 0.96 4 20 0.0093 0.55 10.5 4.1 1 23 256 279 256 279 0.95 5 20 7.3 4.3e+02 1.4 3.6 3 19 288 303 287 306 0.88 6 20 0.013 0.79 10.1 0.6 2 23 338 360 337 360 0.95 7 20 0.0028 0.17 12.2 2.2 1 23 366 389 366 389 0.97 8 20 4.8 2.9e+02 2.0 0.2 1 19 393 411 393 414 0.80 9 20 7.8e-06 0.00046 20.2 0.6 1 23 422 445 422 445 0.97 10 20 0.67 40 4.7 1.0 1 23 450 473 450 473 0.85 11 20 5.8e-05 0.0035 17.5 0.2 2 23 485 506 484 506 0.96 12 20 0.002 0.12 12.6 1.2 1 23 512 534 512 534 0.98 13 20 0.087 5.2 7.5 1.9 2 23 540 560 540 560 0.97 14 20 4.1e-05 0.0024 18.0 0.6 2 23 566 587 566 587 0.97 15 20 0.019 1.2 9.5 0.2 2 23 592 612 591 612 0.96 16 20 6.5 3.9e+02 1.6 4.4 2 23 631 652 630 653 0.93 17 20 4e-05 0.0024 18.0 3.0 1 23 659 681 659 681 0.98 18 20 0.00084 0.05 13.8 1.2 3 23 688 708 686 708 0.96 19 20 0.036 2.2 8.7 0.8 1 23 714 737 714 737 0.93 20 20 0.026 1.5 9.1 1.6 2 23 743 765 743 765 0.95
Sequence Information
- Coding Sequence
- ATGAATGGAAATATGGTAAATTTCAAGCTGAAACTCCGGAATGTGCTTCATAGCACTCAATTTTGCGGAATTTGTTTGGAAAACGATGACAATAACATGAGCACGGTTGATGAAGTCATTGAGATTATTGTGAATCAACAAGTTCGCACAAGTAGTATAAGTGCTATGATTGATCTGGTATTCAAACAGGGACAAAACTTCATAGCATGTTCACAAATATGCAACAGCTGCACAGAAAAACTAATTCAGTCATacattttcatagaaaatgctAAAGAAACACATAAAATTATAGATAACTATGTGAATGACTTGTTCAAGAAATCTGTAGATATCTCCCATCGTTTGCCGGACTCACAAATTGAAAGTAGCAACATAGTTATAGTATTAGACAATATTCTTAATAACTTAACTGCGGGAAAGGAGGCAATAGATATTTTACAACATGATTTCAATAAAGTTCTTGAAGCAAAGAATGAATTACTTGAAGTAAAGAAAGAAATTATGCCAAAGACAAaatgttccaaattcaaatgtaCAAATTGTTTTACAATACTACCCTCATATAGAGAATTGAAACTGCACAGATACAATTGTATGAACCAGAAAATAGAATGTAAAATATGCTTCAAAAGATTTAGAAATCAGCAGTATTTAAATTCACATTACAAAGTGCATGCCAGTTTGAGATGTAAGATCTGTCATGAAATACTCCATGAGGAAGAATTACTCAAACaccttaaaacaaaacatattgaTTCTTTACACAGCTGTTCTGAATGTAGAGAAGTATTTTACACATTAAATACTTTACAAACGCATGAAAAAATCTGTCACAAAATTAAGAAGGAAAACCCGCACTGTTTAATGTGTTTCAAAACTTTTACCGAAGAAGAATTAAAGTTACATAACTGCAAATACAGTTGTCCAGAATGTTCTGAAATACCGTGCATGCATTATAAGTATCTGATGTTCTATAGAGAACAGATATTAAACCATGCTGGCAAGGTGAAGTGTCTAGACTGTGATTATGTCTGTAGAAGAAAGGAAGTCTTACTCGGACACGTGAACCGAGAGCATTTGAACCATCACCCATTCACTTGCGATAAATGTGGACAACAGTTCTATTCCAAAATCGTCCTAGCATCACATATCCACAAATTTCATGAAGACTATTTTGTATGCAGGTTTTGTGATTCAGAATTCAGTAATTTGAACATATACACAAGTCATGTggaagtttgtgaggatatCGAAAGGAGTTTTGTTTGCGATGAGTGTCCAGCCTCCTTTGATTCATCAGATAATCTCACAAAGCATTTTAAACGCAGACACAGTGAAGATATTTTCCCTTGTGGATTATGCAATAAAAAGTTCCTCAAAGATTCTAAAAGAAAGGAACATATGGTGAAGGTACACAGTGGCCTAAGTAAGAATAAAGTTATTAACTTGGAATGTGTTGTGTGTCAAGAGAGATTTGATACTAAAGGGGAATTAGTACAGCATATGAAGTCCCACGGACCTGATACAACTTACCCTTGTAGAATATGCAATACGGAGTATGAAACCTTGAGACAGTTCAGGGCACATAACCGCAAGCACAACGGACCATTTGCCACTTGCCATGTCTGCGGCAAAGAGATGAGAGAAGTTCTTCTAAAAAAACATCTAACTACCCACACAGTATCTATAGAAACTTGTGAAACATGTGGCAAATCATTTCAAAGCATAGGTTTattgaaatcccaccaaaaagtTCATTTGGAAAGCGTGCCATGTCCTAGATGCAATAAGATGATCAACCCAGCTAGATTGCGCAGGCATTGGAGGAGGCATTTAATGGAAGAGCAACCTGGCAACACTGGTATTAAAAAACAGCAGCCAAACTTGAAATGTGAACAGTGTGACTACAAAACTTGGAACAACACATTACTAGAATGTCATATGAACCGACACCATTTAAAAATCAAGCCTTATGTATGCCATATATGTAGCAAAGATTTTATAGGAAAACACTTATTGAACAAGCATTTAGAAACACATAATATGAACAGCGTTATGTGCATGGTCTGTCTGAAGAGTTTCGCTAACTCTGCCTGCCTGAAGATGCATTTACGCTTGCATACCGGTGAAAAACCTTTCACTTGTGAAATTTGTGGTGATAGGTTCAGGTCTTCAAGCATTATGAATGTTCATAAGCTTAAAAAGCATTCGGATAAAAGTAATACTTGTCCGTTATGTTCAAATAAGTTTCATACAGTTCGGGATTTGAGGAGACATGTGATAAAGGTGCATTGGAAGCAGAAAGACAAGCGATTTGACCCTCGAGAGATGAAAGGGTTGGAAGAACATTATCATTTGTTTCATGACGGTAGAAGGGTTAAAGTTGCTGAGGAAGatgttgatttttatatgcctTGTTCATTGTGA
- Protein Sequence
- MNGNMVNFKLKLRNVLHSTQFCGICLENDDNNMSTVDEVIEIIVNQQVRTSSISAMIDLVFKQGQNFIACSQICNSCTEKLIQSYIFIENAKETHKIIDNYVNDLFKKSVDISHRLPDSQIESSNIVIVLDNILNNLTAGKEAIDILQHDFNKVLEAKNELLEVKKEIMPKTKCSKFKCTNCFTILPSYRELKLHRYNCMNQKIECKICFKRFRNQQYLNSHYKVHASLRCKICHEILHEEELLKHLKTKHIDSLHSCSECREVFYTLNTLQTHEKICHKIKKENPHCLMCFKTFTEEELKLHNCKYSCPECSEIPCMHYKYLMFYREQILNHAGKVKCLDCDYVCRRKEVLLGHVNREHLNHHPFTCDKCGQQFYSKIVLASHIHKFHEDYFVCRFCDSEFSNLNIYTSHVEVCEDIERSFVCDECPASFDSSDNLTKHFKRRHSEDIFPCGLCNKKFLKDSKRKEHMVKVHSGLSKNKVINLECVVCQERFDTKGELVQHMKSHGPDTTYPCRICNTEYETLRQFRAHNRKHNGPFATCHVCGKEMREVLLKKHLTTHTVSIETCETCGKSFQSIGLLKSHQKVHLESVPCPRCNKMINPARLRRHWRRHLMEEQPGNTGIKKQQPNLKCEQCDYKTWNNTLLECHMNRHHLKIKPYVCHICSKDFIGKHLLNKHLETHNMNSVMCMVCLKSFANSACLKMHLRLHTGEKPFTCEICGDRFRSSSIMNVHKLKKHSDKSNTCPLCSNKFHTVRDLRRHVIKVHWKQKDKRFDPREMKGLEEHYHLFHDGRRVKVAEEDVDFYMPCSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00783791;
- 90% Identity
- -
- 80% Identity
- -