Basic Information

Insect: Heliothis virescens
Gene Symbol: -
Assembly: GCA_002382865.1
Location: NWSH01001952.1:65819-69754[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 7.7e-05 0.0046 17.1 3.9 1 23 175 197 175 197 0.98

2 7 1.2e-06 7.1e-05 22.8 2.6 1 23 203 225 203 225 0.99

3 7 1.5e-06 9.1e-05 22.4 0.1 2 23 232 253 231 253 0.97

4 7 4.2e-06 0.00025 21.1 3.1 1 23 259 281 259 281 0.98

5 7 2.5e-06 0.00015 21.8 0.2 1 23 287 309 287 309 0.98

6 7 0.00021 0.012 15.7 4.8 1 23 315 338 315 338 0.95

7 7 6.9e-05 0.0041 17.2 0.5 1 23 343 365 343 365 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	7.7e-05	0.0046	17.1	3.9	1	23	175	197	175	197	0.98
2	7	1.2e-06	7.1e-05	22.8	2.6	1	23	203	225	203	225	0.99
3	7	1.5e-06	9.1e-05	22.4	0.1	2	23	232	253	231	253	0.97
4	7	4.2e-06	0.00025	21.1	3.1	1	23	259	281	259	281	0.98
5	7	2.5e-06	0.00015	21.8	0.2	1	23	287	309	287	309	0.98
6	7	0.00021	0.012	15.7	4.8	1	23	315	338	315	338	0.95
7	7	6.9e-05	0.0041	17.2	0.5	1	23	343	365	343	365	0.98

Sequence Information

Coding Sequence: atgaaagCTAATTTAACTGAAATTAATTGGTTTTACGCACTAAAAATGACTTCAAAAATTTGTAGAGTATGTTTAAATCGTGAGTTCTTagtaaatatattcaaaaagaCAGGCTTCCTGACTATATCAACAAAGTTAATGTCTATAGCAAAAATACAAATATCACCAGAAGATGGCCTTCCGGACACTATTTGTTCGAAATGTGTTCAAAAACTGGATGATTGTATAGAATTTATTGAACTCTGTGAAACTTCTGATGTTAAACTGAGGGCCTTACTAGAAAGTAGTTGtagagaaaaaagtttattgctAGACAgtcaaaaaataattgtagaaAATGAAAATTTCTCTGACAATGAGACATTATCACCCAAAAGTGaagataaaatgttatttattgatGAAAGTATAGATCATAGCATACAGGAGGAGCAAACAAATTTAAATGATGTGGACAGTAAAATCGAAGTAGAGcttaaaataaagaatagtCCAAAAACAAAGATGAAGAAGAACCGGAAACATCAATGCTTTATTTGCGGAAAAGTTATGTCATCAAGATTTCGCCTCAAGACGCACATGAGGACTCACACTGGGGAGCGCCCGTACACCTGCCAACACTGCAATAAGAACTTCTCATTGGCACAGAACCTAAAAGTGCATCTCAGAATACATACTGGTGAAAAGCCACTACAGTGCACAATATGTGGTGAATCATTTGCTCAGTCTGCCGGTTTAATAGTTCACAAGCGTAAGCACTCTGGGATCTTACCATATGAGTGTAAACTGTGTCCACGCTCTTTTAGAACCAATGGACATTTACTATATCATACAAGgCAACACACAGGTGAAAAGAACTTCGAGTGTGATACATGCGGTAGAGCATTTATCGCTCGAAGTGATTTAAAGAAGCACTTAGTGACTCACACCGGTGCTCGGCCCCATGTCTGCTGTATCTGTGGAGTTCGTCTCACCCGTGCGACCCATTTGAAGAGACATATGCAACTGACACACAACAAAAATGTATACTCCTGTGATCGTTGCCCAGAGGAGTTCATGAAAAAGAGTGAATTAGAAAGGCATAGTGAAACTCATAAAGATTAG
Protein Sequence: MKANLTEINWFYALKMTSKICRVCLNREFLVNIFKKTGFLTISTKLMSIAKIQISPEDGLPDTICSKCVQKLDDCIEFIELCETSDVKLRALLESSCREKSLLLDSQKIIVENENFSDNETLSPKSEDKMLFIDESIDHSIQEEQTNLNDVDSKIEVELKIKNSPKTKMKKNRKHQCFICGKVMSSRFRLKTHMRTHTGERPYTCQHCNKNFSLAQNLKVHLRIHTGEKPLQCTICGESFAQSAGLIVHKRKHSGILPYECKLCPRSFRTNGHLLYHTRQHTGEKNFECDTCGRAFIARSDLKKHLVTHTGARPHVCCICGVRLTRATHLKRHMQLTHNKNVYSCDRCPEEFMKKSELERHSETHKD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00784628;
90% Identity: -
80% Identity: -