Basic Information

Insect: Heliothis virescens
Gene Symbol: prg
Assembly: GCA_002382865.1
Location: NWSH01002160.1:53699-57284[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 9.3 5.6e+02 1.1 6.8 1 23 178 201 178 201 0.84

2 10 0.0019 0.11 12.7 0.4 1 23 207 230 207 230 0.96

3 10 2.5e-06 0.00015 21.8 3.6 1 23 236 258 236 258 0.96

4 10 2e-07 1.2e-05 25.2 2.8 1 23 264 286 264 286 0.99

5 10 1.3e-05 0.00077 19.5 0.1 1 23 292 314 292 314 0.97

6 10 0.0011 0.063 13.5 2.9 1 23 320 342 320 342 0.96

7 10 4.5e-05 0.0027 17.8 1.5 2 23 437 459 436 459 0.95

8 10 4.1e-05 0.0024 18.0 1.1 1 23 465 487 465 487 0.95

9 10 1.6e-05 0.00095 19.3 3.4 1 23 493 515 493 515 0.98

10 10 0.0011 0.066 13.5 0.0 3 23 524 544 522 544 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	9.3	5.6e+02	1.1	6.8	1	23	178	201	178	201	0.84
2	10	0.0019	0.11	12.7	0.4	1	23	207	230	207	230	0.96
3	10	2.5e-06	0.00015	21.8	3.6	1	23	236	258	236	258	0.96
4	10	2e-07	1.2e-05	25.2	2.8	1	23	264	286	264	286	0.99
5	10	1.3e-05	0.00077	19.5	0.1	1	23	292	314	292	314	0.97
6	10	0.0011	0.063	13.5	2.9	1	23	320	342	320	342	0.96
7	10	4.5e-05	0.0027	17.8	1.5	2	23	437	459	436	459	0.95
8	10	4.1e-05	0.0024	18.0	1.1	1	23	465	487	465	487	0.95
9	10	1.6e-05	0.00095	19.3	3.4	1	23	493	515	493	515	0.98
10	10	0.0011	0.066	13.5	0.0	3	23	524	544	522	544	0.92

Sequence Information

Coding Sequence: ATGGAAGATTCCTACATTATCGCTAATTTCCACACGCTATGTCGACTGTGTCTGAACAAAAGTACATTCTCGACATCGATATTCGCAGCTGCGCCGGACGACGAAACTAATGTTTCTTTAACCTCCAAACTAGCTGAATGTTTCGAGTTGCAAATTGATCCCAATGATGGAATGCCCAATAAAATCTGCTACAAATGCTTGTTCAAAGTTGATAAGTGCTCAAAATTTAAACACCAGTGCATTCAGAATGAAACTAGACTGAGACAGATTACAACAAGAGTTAATGAGCTAGACAATTCCAACTCCTCAGAGCTCAGTAGTTACAACTATGGATCTCATTCTCAAGATGGACAAAAACCAAAACCTGAGGATTATATTGTTGAAGACAGTGTTGTGATGGTTGTTGATCCAAGCCTTGACTATGATTCCTCTGAGGAATCTGAAAATATGGAACCTGTAGAACCAGAAGTAGTTGAAAGAAATAACACTCCAGATGGAGAGCCAATGGCTGaatctttcttcaaaaatgtgTTTATGTGCCAGTTCTGTGATCAAGCTTTTGTGTCTCAAGAAAAATGTAAAGAGCATGAACATAATTGCCATGATCCCAATTTACCATATAGATGTGTTGAATGTAGTCTAGTCTTTGCTGAGCGAAGTCAATATGTGCAGCATACTAAACAAGTGCATGGTAATGATAAACCCTACCACTGTCCAGAATGTGATAAATGTTTTGGTAGGCGCTCGGACTTGCGAAAGCATTCCATTGTTCATACTGGTATAAGGCCATACCAAtgtcaatattgtttgaaaagCTTCTCCCGCAACACTAATCTAAGTAAACATCTACGTATACATGCAGGACATAAACCCCATGTGTGCCCACTCTGTCCGAGGAGTTTTGTGGCCAAAGGAGACTTACAACGCCATGTGCTAGTTCACTCAGGAATGAAGCCATTTGCCTGTAGGAAATGCCACTTAACATTTGGCAGGAGAGATAAACTTATCAAGCATGAATTGCGACATGGCCCCATGAGCCCAAACAAGACAAATGAATTTGACAATGAACATGACACACATGACATGGTTGTGAATGTCAATCCCTTTAGTAATCTCATGACTTCGCCTACTCAACTCCATCCAGATTCATCAAATACTGAATATGATTTACCTCGAGTCCCAGATCATATATCAGGCGAGAGCAGTTTCATGAAGGTGCAGAAAAATACATCTGCCTCTAATAAGCCTACCCAACATTCCCCTTCAAAGCAAAAAGCTGCTGCAAATAAAAACAgacctaaaaatattaaatgtcatCAGTGTCCTAAAAGGTTTAGTTCTTTAGATTCTTATAAAACACATGTGTCTATTGCACATATAGGATCCAGGGTCTTCCAATGCAAAATTTGTTTCAAGAAGTTCCCTAGAAAAAGAGAGCTGGATCGTCATGCAGCTCTTCATTCCGGCATGAAACCTTTTTCATGCAATCAATGTGATAAAAAGTTCACTAAAAAAGATAAACTTGATAAACATGAACAAACTCATGAATGTCTGGTTGTGAATATGCCTTGCATAGAATGTGGTGCCACATTTGAAAAGAAAGCTGATTTAGTTGCTCATATAAAATCACATTTTACTGAAAATTTTGATGATAAAATGACTGAagctgaaattaaaaaagaagaGGATACAGAATTTAATTTAGATGATAATTTCTATGACCTAGAAACTTGA
Protein Sequence: MEDSYIIANFHTLCRLCLNKSTFSTSIFAAAPDDETNVSLTSKLAECFELQIDPNDGMPNKICYKCLFKVDKCSKFKHQCIQNETRLRQITTRVNELDNSNSSELSSYNYGSHSQDGQKPKPEDYIVEDSVVMVVDPSLDYDSSEESENMEPVEPEVVERNNTPDGEPMAESFFKNVFMCQFCDQAFVSQEKCKEHEHNCHDPNLPYRCVECSLVFAERSQYVQHTKQVHGNDKPYHCPECDKCFGRRSDLRKHSIVHTGIRPYQCQYCLKSFSRNTNLSKHLRIHAGHKPHVCPLCPRSFVAKGDLQRHVLVHSGMKPFACRKCHLTFGRRDKLIKHELRHGPMSPNKTNEFDNEHDTHDMVVNVNPFSNLMTSPTQLHPDSSNTEYDLPRVPDHISGESSFMKVQKNTSASNKPTQHSPSKQKAAANKNRPKNIKCHQCPKRFSSLDSYKTHVSIAHIGSRVFQCKICFKKFPRKRELDRHAALHSGMKPFSCNQCDKKFTKKDKLDKHEQTHECLVVNMPCIECGATFEKKADLVAHIKSHFTENFDDKMTEAEIKKEEDTEFNLDDNFYDLET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00185530;
90% Identity: iTF_00726723;
80% Identity: -