Hvir012253.1
Basic Information
- Insect
- Heliothis virescens
- Gene Symbol
- PRDM15
- Assembly
- GCA_002382865.1
- Location
- NWSH01003479.1:65512-73757[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0069 0.41 11.0 0.7 1 21 46 66 46 67 0.94 2 20 0.056 3.3 8.1 6.7 1 19 85 103 85 108 0.93 3 20 0.1 6.2 7.2 0.6 3 23 117 138 116 138 0.97 4 20 0.00014 0.0084 16.3 1.6 1 20 143 162 143 164 0.96 5 20 1.7e-06 0.0001 22.3 0.6 1 23 175 198 175 198 0.96 6 20 1.3 78 3.8 5.7 1 23 204 226 204 227 0.93 7 20 0.017 1 9.7 3.1 1 23 234 256 234 256 0.98 8 20 0.013 0.77 10.1 0.3 1 23 261 283 261 283 0.98 9 20 1.6e-05 0.00093 19.3 0.5 1 23 289 311 289 311 0.98 10 20 8e-05 0.0048 17.0 0.3 2 23 315 336 315 336 0.96 11 20 4.2 2.5e+02 2.2 0.1 8 23 354 369 343 369 0.85 12 20 0.00067 0.04 14.1 3.7 1 23 375 397 375 397 0.97 13 20 4.2 2.5e+02 2.2 0.9 8 23 412 427 404 428 0.72 14 20 0.61 36 4.8 3.6 3 23 532 552 531 552 0.97 15 20 0.013 0.77 10.1 0.3 1 23 557 579 557 579 0.98 16 20 1.6e-05 0.00093 19.3 0.5 1 23 585 607 585 607 0.98 17 20 8e-05 0.0048 17.0 0.3 2 23 611 632 611 632 0.96 18 20 4.2 2.5e+02 2.2 0.1 8 23 650 665 639 665 0.85 19 20 0.00067 0.04 14.1 3.7 1 23 671 693 671 693 0.97 20 20 4.2 2.5e+02 2.2 0.9 8 23 708 723 700 724 0.72
Sequence Information
- Coding Sequence
- aTGCCACCCAAACGGAAGGTAGGGCGACCGCCTGGGTCTAAAACTAAAAGGAAAAAGACGTCTCTGAAACATCATAAAAATACTTCAGtgataaagaagaaagaaaacgaTTTATCTCCTGAAACTAATATTGAATATATCTgtaatatttgcaataaaacaTTTCTCACTGGAAAGGAGCTGTTGAAACATCATAGAGATTGTAAAGCTGTGATCCCTGTAATACCTGAAGGTGGTGTTAGGAagGCAGAGTTCAGTTGCAAGGAATGTCGCAAGAAGTTCAGGTTCCAGAAAAGTTTCAAACAGCATTGTTTGTTGGAGCACTCCAAGTTACCCAACAGCGTTGCTTGTGATCAGTGTGAGGTCAAGTGTCCCAACAAAAAAGTTCTAATAGATCACATCAAGAAGGTTCACGATAGAGAAATTTATGAATGTTCAAATTGCAAGCGTCAATTTGTTAGACGCTCACATGTGTTTCGGCACATGGCACAGAGTGGATGTGACGGACAAGGAGGAGCCTCATTCATGTGTGAAatatgCAATTCAAGATTTTCAAGAAAAGACAATTTAATGGCCCACATACGATTGCAACATATAATTCCGAATGCATATCTCTGCAAGCTGTGTTTATACTccacaaagaatttttcaaaattggttAATCATTGGCACAAACATCATTCAGaaACTCCTGGTCAATACCAGTGTCACCACTGTAGCAAGTGGACCAGTTCCCGCGCAGCAATGACGAAGCATCTTGAGATACACGGCGAGAAGAAGTATTCTTGTGAAGTGTGCGGCTACAGTACGTTCACCATCGAGGTGATGCGCCGGCACGTGCTCACCCATATCCAGGACAAGCCGTACAAGTGCTCGCTGTGCGGCAGCTCGTTCATACAGCGCGTGCAACTCGCGCGACATCTGGAGAAACACCGCGGCAACGTGTGCCTCAAGTGTGGCAACTCCTTCTCTACCAGAGCCCAGTTGCTGATTCACCTAAGAGAGCATATGGGATTAAAGAAATTATTCTGTCCGATACAAAGTTGTCCATTAGTATCAAAAGAATTTGTTAATGAGGCCAGCTGGCATAACCATCTGAAAGTCCATTTGGATAATAAGCCCCACAGCTGCGACGTGTGCAGCAAGCAGTTCCACTCGGTGGTGAACCTGAAGCGGCACCTGGAGACGCACACGCTGGACCGGCCGCGGCGCTGTATGTACTGCGTGTCCGCGCGGGCCTACGTCCGCGGCCTGCAGCTCATCCGCCACGTGCGCAAGCACCACCCCGCCGTCTTCCGCGGCCACCTCGCGCACGTGCGGCAAGTGCTCGGAAGCAATTCAGATACGTTAAACAGAGTGAAGAAGTCTGAAATTGAATCTATTCTAAATCTGTTGGACGTGGAGTCGGATCGCATTCTGCAAGGGTATAGTGGAGCCGGCGTGCTGTATGGCGGGATGCAGGAGGAAGAGGAGAGCAGTTCTAGCAACAATAAAGAGGAGAAAGTGAAAGTAAATAATCCGCTAATGTCAGAGGAGGAACTGACTGAGAATTTGAGAAAGCTACTAGCCCAACTAATTGATGATGNtgcatttTGTCACCACTGTAGCAAGTGGACCAGTTCCCGCGCAGCAATGACGAAGCATCTTGAGATACACGGCGAGAAGAAGTATTCTTGTGAAGTGTGCGGCTACAGTACGTTCACCATCGAGGTGATGCGCCGGCACGTGCTCACCCATATCCAGGACAAGCCGTACAAGTGCTCGCTGTGCGGCAGCTCGTTCATACAGCGCGTGCAACTCGCGCGACATCTGGAGAAACACCGCGGCAACGTGTGCCTCAAGTGTGGCAACTCCTTCTCTACCAGAGCCCAGTTGCTGATTCACCTAAGAGAGCATATGGGATTAAAGAAATTATTCTGTCCGATACAAAGTTGTCCATTAGTATCAAAAGAATTTGTTAATGAGGCCAGCTGGCATAACCATCTGAAAGTCCATTTGGATAATAAGCCCCACAGCTGCGACGTGTGCAGCAAGCAGTTCCACTCGGTGGTGAACCTGAAGCGGCACCTGGAGACGCACACGCTGGACCGGCCGCGGCGCTGTATGTACTGCGTGTCCGCGCGGGCCTACGTCCGCGGCCTGCAGCTCATCCGCCACGTGCGCAAGCACCACCCCGCCGTCTTCCGCGGCCACCTCGCGCACGTGCGGCAAGTGCTCGGAAGCAATTCAGATACGTTAAACAGAGTGAAGAAGTCTGAAATTGAATCTATTCTAAATCTGTTGGACGTGGAGTCGGATCGCATTCTGCAAGGGTATAGTGGAGCCGGCGTGCTGTATGGCGGGATGCAGGAGGAAGAGGAGAGCAGTTCTAGCAACAATAAAGAGGAGAAAGTGAAAGTAAATAATCCGCTAATGTCAGAGGAGGAACTGACTGAGAATTTGAGAAAGCTACTAGCCCAACTAATTGATGATGAAACACTGGATCTGTTTGGGTGGCCCGATGAGAGTGTAGATGTGgtgTTAGAAAAAGTGATTGAGCAATGCGGCGCGAAGGCCGCTGACCGCGACAAATGGACGCGCGTGCAGCGCTTACGCGAGAACTCGAAGCATTTGTTCCTGTACGTGCTGGAAGACAAGAACATCGCGCGCATGCTGGACACGCACACCATAGACCAGATCATCAAGCACATCCTCAAGCAAGTCAGCGACGACGATCCCAAGGATGTCGAATAA
- Protein Sequence
- MPPKRKVGRPPGSKTKRKKTSLKHHKNTSVIKKKENDLSPETNIEYICNICNKTFLTGKELLKHHRDCKAVIPVIPEGGVRKAEFSCKECRKKFRFQKSFKQHCLLEHSKLPNSVACDQCEVKCPNKKVLIDHIKKVHDREIYECSNCKRQFVRRSHVFRHMAQSGCDGQGGASFMCEICNSRFSRKDNLMAHIRLQHIIPNAYLCKLCLYSTKNFSKLVNHWHKHHSETPGQYQCHHCSKWTSSRAAMTKHLEIHGEKKYSCEVCGYSTFTIEVMRRHVLTHIQDKPYKCSLCGSSFIQRVQLARHLEKHRGNVCLKCGNSFSTRAQLLIHLREHMGLKKLFCPIQSCPLVSKEFVNEASWHNHLKVHLDNKPHSCDVCSKQFHSVVNLKRHLETHTLDRPRRCMYCVSARAYVRGLQLIRHVRKHHPAVFRGHLAHVRQVLGSNSDTLNRVKKSEIESILNLLDVESDRILQGYSGAGVLYGGMQEEEESSSSNNKEEKVKVNNPLMSEEELTENLRKLLAQLIDDXAFCHHCSKWTSSRAAMTKHLEIHGEKKYSCEVCGYSTFTIEVMRRHVLTHIQDKPYKCSLCGSSFIQRVQLARHLEKHRGNVCLKCGNSFSTRAQLLIHLREHMGLKKLFCPIQSCPLVSKEFVNEASWHNHLKVHLDNKPHSCDVCSKQFHSVVNLKRHLETHTLDRPRRCMYCVSARAYVRGLQLIRHVRKHHPAVFRGHLAHVRQVLGSNSDTLNRVKKSEIESILNLLDVESDRILQGYSGAGVLYGGMQEEEESSSSNNKEEKVKVNNPLMSEEELTENLRKLLAQLIDDETLDLFGWPDESVDVVLEKVIEQCGAKAADRDKWTRVQRLRENSKHLFLYVLEDKNIARMLDTHTIDQIIKHILKQVSDDDPKDVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -