Basic Information

Insect: Heliothis virescens
Gene Symbol: -
Assembly: GCA_002382865.1
Location: NWSH01000357.1:5474-11503[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00091 0.054 13.7 3.6 2 23 208 230 207 230 0.96

2 12 1 62 4.1 0.3 6 23 240 257 238 257 0.92

3 12 0.0029 0.18 12.1 2.1 1 23 292 315 292 315 0.93

4 12 3.7 2.2e+02 2.3 0.9 5 23 324 342 322 342 0.92

5 12 0.00024 0.014 15.5 0.9 2 23 349 370 348 370 0.96

6 12 3.9e-05 0.0023 18.0 2.3 1 23 378 400 378 400 0.97

7 12 0.00011 0.0063 16.7 0.9 1 23 409 432 409 432 0.98

8 12 0.00017 0.01 16.0 0.2 1 23 438 460 438 460 0.97

9 12 1.4e-06 8.4e-05 22.6 4.1 1 23 466 488 466 488 0.98

10 12 0.0003 0.018 15.2 1.0 1 23 493 515 493 515 0.98

11 12 2.3e-06 0.00014 21.9 4.2 1 23 521 543 521 543 0.97

12 12 0.00014 0.0082 16.3 2.7 2 23 550 572 549 572 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00091	0.054	13.7	3.6	2	23	208	230	207	230	0.96
2	12	1	62	4.1	0.3	6	23	240	257	238	257	0.92
3	12	0.0029	0.18	12.1	2.1	1	23	292	315	292	315	0.93
4	12	3.7	2.2e+02	2.3	0.9	5	23	324	342	322	342	0.92
5	12	0.00024	0.014	15.5	0.9	2	23	349	370	348	370	0.96
6	12	3.9e-05	0.0023	18.0	2.3	1	23	378	400	378	400	0.97
7	12	0.00011	0.0063	16.7	0.9	1	23	409	432	409	432	0.98
8	12	0.00017	0.01	16.0	0.2	1	23	438	460	438	460	0.97
9	12	1.4e-06	8.4e-05	22.6	4.1	1	23	466	488	466	488	0.98
10	12	0.0003	0.018	15.2	1.0	1	23	493	515	493	515	0.98
11	12	2.3e-06	0.00014	21.9	4.2	1	23	521	543	521	543	0.97
12	12	0.00014	0.0082	16.3	2.7	2	23	550	572	549	572	0.95

Sequence Information

Coding Sequence: ATGGCTTTGAGTGTACGAGATTTGTGTAGACTGTGTGCAAAGAAAGATGAGTTTTCAAAAGATCTATTGCACGAAAATAATCGAAATGTCTTAAAACTTTTACAAGATTTCATACAGATTACCATCTACGATGACGACTCTTTGCCGACGAAGATCTGTTTGAACTGTGAAGAAAAAATGGTCTCATTCCAGCTTTTCATTCTTGAATGTTATAAAACTCAGGATACACTGCAGAAGATGTTTGATGATCATGACTCCCGGAATATCAAAGTAGAACAAACACCAGGGGCTATAGATTTTGATGTTTCAATCAAATCTGAGGTCAAAGATGAGATGTCGGCAGAAGACATAGTTTGTGCATTAAACAATGATGCCTCATTATCGGTAATAGATGCTTTCCCTGACAGTCATGATGAACACGATGACATCGACATTCACAATGTGGATGtgaaggatgatgatgatgatgatgatgactatcTAGATGATATTGCAATAGCATCACTTAAGCCAATAAAAACGAAACGCATAGCAAGAAGGGAAATAACTGAACAGGAGGCAGAGAAGTTAAACCAAGTTCTCAGAAAGCCCTATCCAAAAGTAAAAGATTTTGTAAAattgcAGTGTGATTATTGTGGAGAGAAGCAAAAGACATGGAGTCACCTTCGAGCACACTATTGCAAAGAACATAATAGTGGACCATTTGCCTACTGCCTATGTGGGTTTGTTGTGAGATCCAAAAGTGTTCTTTACAAGCATGTATCAGACCACAAGATAGAAAGTAGAAAATTGAGGAAGAACGACGAAGATAATGATAATGAAGATAAACAAAAGAGTGAATTCGCAAATTTGAATGTTAAAGATTTTATAAGGTTCATATGTCCACATTGTCAGAAGGAATGTCCAAGTTGGTACAGACTAAAGGAGCACTCTGAGAGTATCCATAAAGTATCACCAGTAGTGTCTTGTATATGTGGCATCACGCTGAAATCTAAGTCAGTAATGTACAAGCATGTGCATGACCATAGAAATCCAAATGTGCTATCATGTGACAAGTGTCCCCGCATAACGAAAACATTATCAGCTTTAAATAAACACAAGATGCGACATATACCAAAATCAGAAAGAAAGTTTTGTTGTGCATCCTGCGATAAAATATTCACTTCAAAGGACGCGTTGAAGTCACACGAAAGATCGCACATACCGATTGAGGAACGAAAAATATATCGCTGTGATATGTGCAATATGAAGTTCACGACGCGTTCTTCAGCGGCTTCACACAAGCGCGTTGTTCACGATAAGATCAAGGGCTATGTATGTGATCTCTGCGGGTACGCGTGCGGCACCAACGGCGAGCTGCGCCAGCACCGCGCCATACACAGCGACGATAAGCCCTTCGTGTGTAGGAAGTGCTCCAAACGCTTCAAGACGTATTCGAACCTGAAGACACACATGGACACTCACGAGGACACGTCGTACGAGTGCTACATCTGCCGGCGCGTGCTCAACAGCCGCCGCACGCTGCGGAAACACCTCCTCGTGCACGAGGAAAAGTGCAAGCATGTGTGCTCTTACTGTAACAAAGCATTCAAGAGGCGACAGACTTTGAAGgtacaCATGTACACCCACACGGGCGACAAGCCGCTATCGTGCAAGTGGTGCGACGAGCGGTTCTCGTACGCGTCGACGCTGCGCTCGCACCGGCTGCGCTGCCACCCCGACAAGATGGCCGCGCAAGCGCACGAAAACTATTCCAATTATGCGCACTCCGCCATGCAAGAGGATTATATAAAAAACGACGTGGCAGCCGTAAATCTTCCAGTATCAGTAGCGAAAAACGAAGTCGAGGCTATGTAA
Protein Sequence: MALSVRDLCRLCAKKDEFSKDLLHENNRNVLKLLQDFIQITIYDDDSLPTKICLNCEEKMVSFQLFILECYKTQDTLQKMFDDHDSRNIKVEQTPGAIDFDVSIKSEVKDEMSAEDIVCALNNDASLSVIDAFPDSHDEHDDIDIHNVDVKDDDDDDDDYLDDIAIASLKPIKTKRIARREITEQEAEKLNQVLRKPYPKVKDFVKLQCDYCGEKQKTWSHLRAHYCKEHNSGPFAYCLCGFVVRSKSVLYKHVSDHKIESRKLRKNDEDNDNEDKQKSEFANLNVKDFIRFICPHCQKECPSWYRLKEHSESIHKVSPVVSCICGITLKSKSVMYKHVHDHRNPNVLSCDKCPRITKTLSALNKHKMRHIPKSERKFCCASCDKIFTSKDALKSHERSHIPIEERKIYRCDMCNMKFTTRSSAASHKRVVHDKIKGYVCDLCGYACGTNGELRQHRAIHSDDKPFVCRKCSKRFKTYSNLKTHMDTHEDTSYECYICRRVLNSRRTLRKHLLVHEEKCKHVCSYCNKAFKRRQTLKVHMYTHTGDKPLSCKWCDERFSYASTLRSHRLRCHPDKMAAQAHENYSNYAHSAMQEDYIKNDVAAVNLPVSVAKNEVEAM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01029509;
90% Identity: iTF_00784623;
80% Identity: -