Basic Information

Insect: Heliothis virescens
Gene Symbol: SCRT1
Assembly: GCA_002382865.1
Location: NWSH01001510.1:44956-58934[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 7.8e-05 0.0047 17.1 0.8 1 23 261 283 261 283 0.98

2 11 0.0016 0.098 12.9 0.4 1 23 290 312 290 312 0.98

3 11 9.5 5.7e+02 1.1 0.1 1 7 316 322 316 326 0.90

4 11 8.2e-06 0.00049 20.2 4.3 2 23 346 368 345 368 0.94

5 11 0.00026 0.015 15.4 0.4 2 23 375 397 374 397 0.92

6 11 2.7e-06 0.00016 21.6 0.2 1 23 410 432 410 432 0.97

7 11 3e-06 0.00018 21.5 0.6 1 22 438 459 438 463 0.94

8 11 0.00044 0.026 14.7 0.6 3 23 473 494 471 494 0.95

9 11 6.3e-05 0.0038 17.4 0.6 1 23 500 523 500 523 0.98

10 11 2e-05 0.0012 19.0 1.3 1 23 532 554 532 554 0.98

11 11 0.036 2.1 8.7 0.4 1 19 560 578 560 583 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	7.8e-05	0.0047	17.1	0.8	1	23	261	283	261	283	0.98
2	11	0.0016	0.098	12.9	0.4	1	23	290	312	290	312	0.98
3	11	9.5	5.7e+02	1.1	0.1	1	7	316	322	316	326	0.90
4	11	8.2e-06	0.00049	20.2	4.3	2	23	346	368	345	368	0.94
5	11	0.00026	0.015	15.4	0.4	2	23	375	397	374	397	0.92
6	11	2.7e-06	0.00016	21.6	0.2	1	23	410	432	410	432	0.97
7	11	3e-06	0.00018	21.5	0.6	1	22	438	459	438	463	0.94
8	11	0.00044	0.026	14.7	0.6	3	23	473	494	471	494	0.95
9	11	6.3e-05	0.0038	17.4	0.6	1	23	500	523	500	523	0.98
10	11	2e-05	0.0012	19.0	1.3	1	23	532	554	532	554	0.98
11	11	0.036	2.1	8.7	0.4	1	19	560	578	560	583	0.87

Sequence Information

Coding Sequence: ATGGGTGATATTACTACTTGGACGCGTAAAATTGAGGAAGAAAAACCCGAATGTTCTAAGGACTActgttttgtgtgtttgtgtttgaaagaaGAGAAAAATGTACAAAGTTATGCCTTTCAATGTGGTCCACTCATGAAAGTACTTCAGATGGACTGCATAAACCTATGTTATCTGTGCAAAAGAATGGCACAGCATGCAGAAAtgttcatacaaaatgtacagaGCAATCAAATACTACTGGAAAACTTTCAAAATGAAATGGACGAAACACTAAAAGCGGTCCGCACCCAGATTCAACCTCTAGTCAATTTAACAGAAGTGCCATTAAACATAATAGAGTTATCCGAGAAAGACGGCCAGCGTTACGAGGAGCAGTTCACGGTGATCTGCTCAAGGAATAGAAGCCAGCACATCCAGGTCAAGGTGGAAATGAAGGAGGAGGATTTTATTGAGAGGCTGGAAGGAGAGTTTATTAATGGGAATGAtgATTTTCCAGACACATGCATaaaagatgaagatgatgattttcCTCTAAATGCTTTACTGAAAGAAGAATTAGTTTTAGACAATGAAGACAGCTTAGGCTTCCTGAACAATCTTAGAGCAACAAATAGAAAGAACAAaattaagaagaaaaagaaaatcaaaaaagAAAAGGAGGATGCAAAACTGTTGGcaaaagCTGCAACTCAGGTAAAAATGGTTTACATAACACGGGACCAAGTCATGGAGGAACGGTCTAAATTATCACAGGATCCAAAATACCTCACTTGCATGTACAAATGTGTGGACTGTGTCAAAGCATTCAGTTTTAAAGGCAGCTATGATAAGCATATGGAATCTCATAATCAGTTTATAGGTGACTACGAATGTGAAATATGTAAACAGAGAATGGAGTCGGAGGATAAGCTAGTCAACCATATGAGATACCATTATATccGCTATCAATGTTTGGAATGTGGTTTGATTCGTAACTGCAGACTAACTATACTAGATCATTACAATTCATATCACTGCCAGGATCTATATGTGACCTGTCCACATTGCAGTAAAAAGTTCAAACGGTCAGGTTCGCTGCGCAAGCACATCCACTACATCCACAACCGCGGGTCGCGCGTGACGTGCGCGTACTGCCACAAGACGTACGCCGACAAGGGCGTACTGCGCGCGCACATGGTGCTGAAACATCCAACAGAAGTGTCAGCGAGAGAGATAATCAAGAAGTACGTGTGTCAGGAGTGCGGGATGGCCTTCAAGTCGCCTTCGCTGCTGAGGAACCATGGAAGCAAGCACTCCGACAGCCGGGACTATTACTGCGTCGAGTGTGACAAGAGTTTCAAAACGGAAGCTACATTGAAGAATCATTTGAAGACTGTATCAATACATGCCCAGCATATAGAATTACCaTTAGCCTGTCCTCATTGTGAGAAAAGGTTTGCGATCCGGCGAGATTTAGACAGGCACGTCAATAGAATACATCTCAATATCAAACCCTTCACTTGTGACAGCTGCGATAGGACATACATAGATGCGTGGACGCTGAAAAACCACAAGAAGACAGTTCACGAAGGGTACAAGAAGCCTCTTCAGTACCCCTGTACCATGTGCGACAAAGTGTTCAATAGCAGCCATATACTGAAAGGTCACATTCGGACCCACACGGGAGAGCGTCCCTATCAATGCAGCAAATGTCCAGCACAGTTCAGTCAGTCGAACATACTGCGAACGCATGATAGGCTCATACATCTTCAGCTCACGAGGGACGGACGACCCAAGGTCAAATAG
Protein Sequence: MGDITTWTRKIEEEKPECSKDYCFVCLCLKEEKNVQSYAFQCGPLMKVLQMDCINLCYLCKRMAQHAEMFIQNVQSNQILLENFQNEMDETLKAVRTQIQPLVNLTEVPLNIIELSEKDGQRYEEQFTVICSRNRSQHIQVKVEMKEEDFIERLEGEFINGNDDFPDTCIKDEDDDFPLNALLKEELVLDNEDSLGFLNNLRATNRKNKIKKKKKIKKEKEDAKLLAKAATQVKMVYITRDQVMEERSKLSQDPKYLTCMYKCVDCVKAFSFKGSYDKHMESHNQFIGDYECEICKQRMESEDKLVNHMRYHYIRYQCLECGLIRNCRLTILDHYNSYHCQDLYVTCPHCSKKFKRSGSLRKHIHYIHNRGSRVTCAYCHKTYADKGVLRAHMVLKHPTEVSAREIIKKYVCQECGMAFKSPSLLRNHGSKHSDSRDYYCVECDKSFKTEATLKNHLKTVSIHAQHIELPLACPHCEKRFAIRRDLDRHVNRIHLNIKPFTCDSCDRTYIDAWTLKNHKKTVHEGYKKPLQYPCTMCDKVFNSSHILKGHIRTHTGERPYQCSKCPAQFSQSNILRTHDRLIHLQLTRDGRPKVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00785435;
90% Identity: -
80% Identity: -