Hvir002736.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Heliothis virescens
Gene Symbol
Bcl11a
Assembly
GCA_002382865.1
Location
NWSH01000508.1:3520-16686[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.053 3.2 8.1 9.5 1 23 283 305 283 305 0.96
2 16 3.2e-06 0.00019 21.4 1.7 2 23 313 334 312 334 0.96
3 16 0.081 4.8 7.6 0.6 1 23 338 360 338 360 0.97
4 16 0.00016 0.0093 16.1 2.7 1 23 365 388 365 388 0.97
5 16 0.00061 0.037 14.3 0.6 3 23 394 415 393 415 0.96
6 16 0.0047 0.28 11.5 0.0 3 20 432 449 431 451 0.93
7 16 7.4e-05 0.0045 17.1 0.7 3 23 465 486 465 486 0.98
8 16 0.06 3.6 8.0 1.1 2 23 506 528 506 528 0.98
9 16 0.0012 0.071 13.3 3.3 2 23 540 561 539 561 0.96
10 16 0.00032 0.019 15.1 3.3 1 23 567 589 567 589 0.99
11 16 3.3e-05 0.002 18.2 0.1 1 21 595 615 595 615 0.96
12 16 7.5 4.5e+02 1.4 0.1 6 23 616 634 615 634 0.90
13 16 0.0012 0.071 13.3 3.3 2 23 646 667 645 667 0.96
14 16 0.00032 0.019 15.1 3.3 1 23 673 695 673 695 0.99
15 16 1.5e-06 8.7e-05 22.5 0.2 1 23 701 723 701 723 0.98
16 16 0.00077 0.046 13.9 1.5 1 23 729 752 729 752 0.98

Sequence Information

Coding Sequence
ATGGTAGACGTACAAGTGTGTCGTATTTGTCTAAACATGGGTGTAGCAATGCAGGACTTGCTGGCCTACCCCTTAGAAACTTATTTTGCATCATTCATGATCGAGAGCAAGCCTGTACACACAGAACTACCTCCATATGCCTGCTATGAGTGTGCAGCACTGTTGAAGAAGTATCACCTGTTCAAGCAAAAGGGTCTGCACAGCCAGGGCCTGCTTTGCAGTGTTATTGATGATTGTGGAAAGATAACACCaccacaaataaaatcaatcaGCAGAACGAACCTCCTTGCATATTCCAAAGTCACACAAATTGACATAGTAGCTGAAGACAGCACAAATTCTCTCACCATTGACCTACCTTACACATATACAGTAGAGGAGACTACAAACTGTCTAAACATCGACCAACCAGACTTCATGGTCAAAGTTATTAAGAAAGAGGATCATGATTACACAGAGGTACCTGATGATATCACCCCTGGGATATCTAGTGATGAAGAAGAATTTGAGAGTATTGGGAAGAAGAAATTACGAGATTTGGAGAAGGTTGACATTTGTGTGAAGATGGATTTGGATGAGGAATCTGATGAGTCTGAGCTCCCATTAACCATGGTTGATGTAAAAAGACTGCCGCTACGCAAGTCGCGAGCTGTCACTAAGAAGCAGGGCAGACTAAAGAGGAATAACACAAGGGTTCCTAAGAAGAGGTCCATTGAAGTGAAGGAAGATACCCTCTGTGAGGACAAGGCTGATCTGGATGATATTACTGTTGTTACTCTGACGCTAGAAGATCAGTTGGAAGAGATAAACAATCGCAAACAGTCGTCCAACTACCTGAACTGTCCATACAAGTGTCATTTATGCTATAAGGGGTTCAATAACACACATACATGGAAACATCATCTTACCAAACATACTCCGAGCGCCGGGGACGTCGAGTGCAATATCTGTAAATATAGATTTAAAACGAAAAAGAATCTACAGCGACATGTTCTCAACCACGGGAGGAAATATGTCTGCAAGTTATGTCCATACAACTCTAGAAATATTACCACAGTGAAGCAGCATCAAGGTTCTCACAAAGGCGTGACTCACAAGTGCAACTTTTGTGACGAAGTCTTCACAGTACGAACAACGTACGTAAGCCATATGCGAATCAAGCACCCTTCTGAGAACATTTGCGGTTACTGCGGCTACTCGTTCCACAGTCAGCGCGGACTGCTCGTACACAAGAATATGGTGCATAAGGACGTTGATGTAAAACCAGAAGAGAATACAGAAGAGGGTCCGTACTGCGCGGAGTGCGACGTCAAGTTCATATCGTCTGACGCGTACAAGCGGCACATCGTCATGTCCGTCAAGCACACGCAGACCACCGACCCTATTAACGGGTGCCGAGTCTGCGGGACTACGTTCGCGGATCCCGAGGAGTTGCGGCTGCATCACCGTAAGGAGCATCCGAAGAGACAGCCCAAGCACTACCGGTTGAAGACTGCGAAGAACAAGTGGCCGGCGAAGTGTCAACATTGTCCTCAAGAGATAGAAAACGCGCGCGCCTATTGGAAACATTTCCGAACGATGCATCCCAATGAAAACTATCCCGTGCAGAAGAAATGCGTCTGTGATATATGCGGGAAGAGATTTGCTTGCAATGCCCTGTTGACCCTCCACAAACGAACACACGTAGGCGAGCGTCCATACAAATGTTCGCGCTGTGACCGCGCGTGCTACAGCGCGTTCGACTTGCGCGTCCATCAGCAGAAACACTCGGACGTCAGGCCCTTCCCCTGCACTGTCTGTGCTAAGGCTTTTAAGAGGAAAGAGGCTTTGGAAAGGCATTTAAAGTGTCCTCAAGAGATAGAAAACGCGCGCGCCTATTGGAAACATTTCCGAACGATGCATCCCAATGAAAACTATCCCGTGCAGAAGAAATGCGTCTGTGATATATGCGGGAAGAGATTTGCTTGCAATGCCCTGTTGACCCTCCACAAACGAACACACGTAGGCGAGCGTCCATACAAATGTTCGCGCTGTGACCGCGCGTGCTACAGCGCGTTCGACTTGCGCGTCCATCAGCAGAAACACTCGGACGTCAGGCCCTTCCCCTGCACTGTCTGTGCTAAGGCTTTTAAGAGGAAAGAGGCTTTGGAAAGGCATTTAAAGATCCATTCCGGCGATAATCCGTACAAATGTGAGATATGTGGCGTGGCCTTCAACAAGTCGTGTACGCGAACCCTGCACGTTCGCACCGTGCATACTAAGGAACCCGCGCCGCCGCGGAAACGACGgaacaaaattaacaaataa
Protein Sequence
MVDVQVCRICLNMGVAMQDLLAYPLETYFASFMIESKPVHTELPPYACYECAALLKKYHLFKQKGLHSQGLLCSVIDDCGKITPPQIKSISRTNLLAYSKVTQIDIVAEDSTNSLTIDLPYTYTVEETTNCLNIDQPDFMVKVIKKEDHDYTEVPDDITPGISSDEEEFESIGKKKLRDLEKVDICVKMDLDEESDESELPLTMVDVKRLPLRKSRAVTKKQGRLKRNNTRVPKKRSIEVKEDTLCEDKADLDDITVVTLTLEDQLEEINNRKQSSNYLNCPYKCHLCYKGFNNTHTWKHHLTKHTPSAGDVECNICKYRFKTKKNLQRHVLNHGRKYVCKLCPYNSRNITTVKQHQGSHKGVTHKCNFCDEVFTVRTTYVSHMRIKHPSENICGYCGYSFHSQRGLLVHKNMVHKDVDVKPEENTEEGPYCAECDVKFISSDAYKRHIVMSVKHTQTTDPINGCRVCGTTFADPEELRLHHRKEHPKRQPKHYRLKTAKNKWPAKCQHCPQEIENARAYWKHFRTMHPNENYPVQKKCVCDICGKRFACNALLTLHKRTHVGERPYKCSRCDRACYSAFDLRVHQQKHSDVRPFPCTVCAKAFKRKEALERHLKCPQEIENARAYWKHFRTMHPNENYPVQKKCVCDICGKRFACNALLTLHKRTHVGERPYKCSRCDRACYSAFDLRVHQQKHSDVRPFPCTVCAKAFKRKEALERHLKIHSGDNPYKCEICGVAFNKSCTRTLHVRTVHTKEPAPPRKRRNKINK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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