Hvir012447.1
Basic Information
- Insect
- Heliothis virescens
- Gene Symbol
- -
- Assembly
- GCA_002382865.1
- Location
- NWSH01002560.1:77186-92383[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 36 0.052 3.1 8.2 2.9 6 23 47 65 43 65 0.92 2 36 0.55 33 5.0 0.6 3 23 94 115 94 116 0.95 3 36 3.6 2.1e+02 2.4 2.2 2 23 138 159 137 159 0.92 4 36 3.2e-05 0.0019 18.3 0.4 1 23 163 186 163 186 0.94 5 36 0.0075 0.45 10.8 0.2 3 20 192 209 191 211 0.92 6 36 8.6 5.2e+02 1.2 0.3 1 10 218 227 218 241 0.78 7 36 0.36 21 5.5 0.2 2 23 335 357 334 357 0.92 8 36 1.6e-05 0.00095 19.2 0.4 1 23 452 475 452 475 0.96 9 36 0.013 0.77 10.1 0.9 3 20 482 499 481 501 0.94 10 36 4.2 2.5e+02 2.2 6.4 3 23 510 531 508 531 0.90 11 36 0.0035 0.21 11.9 2.5 1 23 538 561 538 561 0.96 12 36 1.3 78 3.8 1.6 1 23 566 588 566 588 0.94 13 36 4.4e-06 0.00026 21.0 0.2 1 20 594 613 594 616 0.94 14 36 0.076 4.6 7.7 0.9 1 14 622 635 622 638 0.89 15 36 1.4 81 3.7 1.0 3 23 668 689 666 689 0.90 16 36 0.86 51 4.3 0.4 2 23 746 768 745 768 0.92 17 36 0.45 27 5.2 0.1 2 23 793 815 792 815 0.95 18 36 0.12 7 7.1 1.6 3 23 839 859 837 859 0.96 19 36 2.4e-05 0.0014 18.7 1.0 2 20 864 882 861 884 0.88 20 36 0.28 17 5.9 0.6 3 23 923 944 921 944 0.92 21 36 4.3e-05 0.0026 17.9 0.2 1 23 951 974 951 974 0.93 22 36 7.3e-05 0.0044 17.2 0.4 1 23 979 1001 979 1001 0.98 23 36 2.3e-05 0.0014 18.7 2.4 1 20 1007 1026 1007 1029 0.93 24 36 2.6e-06 0.00016 21.7 2.0 1 23 1035 1058 1035 1058 0.97 25 36 0.87 52 4.3 0.8 2 23 1072 1094 1071 1094 0.92 26 36 0.93 56 4.2 0.1 2 23 1121 1143 1120 1143 0.94 27 36 0.87 52 4.3 0.8 2 23 1169 1191 1168 1191 0.92 28 36 0.93 56 4.2 0.1 2 23 1218 1240 1217 1240 0.94 29 36 2 1.2e+02 3.2 6.7 1 23 1265 1287 1265 1287 0.95 30 36 0.21 13 6.3 2.0 1 21 1291 1311 1291 1314 0.95 31 36 0.22 13 6.2 0.6 1 21 1318 1338 1318 1339 0.93 32 36 0.064 3.8 7.9 1.9 3 23 1347 1369 1346 1369 0.88 33 36 0.18 11 6.5 4.4 1 23 1376 1399 1376 1399 0.95 34 36 2.9 1.8e+02 2.7 2.0 1 23 1404 1426 1404 1426 0.90 35 36 1.6e-05 0.00096 19.2 0.8 1 20 1432 1451 1432 1454 0.94 36 36 7.3e-05 0.0044 17.2 0.6 1 23 1460 1483 1460 1483 0.98
Sequence Information
- Coding Sequence
- ATGAATGACGAAGGACCATTTCTTTTTGTTCTAGACTACGATCCGTTGGTCGAAGCGAGGCAAAATGCTAAGCAAATATTGAAGTACTCTACCGTCTATCCCTTCAGACTCCAAATTAGTCAGATGATGTGCGTCTGCTGCCGCCAATGCTTTGAAGACCCTGAACTGTTTAGGAGGCATATGAGACTGGACCACCGGGCCAACGTCCTCTCATTTACTCCTGGGCACCACTCCCTGGGCCTCAGAGAATACCTCAAAGCCGACTGCACAGACCTAGGATGCAAGATATGCGCCAAAAGATTTGACGATGTTAAATCAATCGCTGAACACCTTTCCTCAGTACACCACAAGAAAATCAACTTCAACTTTGATTTCGGAATACAGAGCTTCAAGTTAGGACGCGAAAAATGGGTTTGCGCTTCATGTAACAAAAAGTTTCCTTGCCTACGTTCCTTGTCTCGGCACAATAGCAGCCATTATCACAAGTATACGTGTGAAAATTGCGGACGATCTTACATCAGTCGCGATAGTTTGAGGAGCCATGTGCTCTTGAGTCATTCTCAAGAGAAAATTTGCGTTAAATGTAAAGAATCTTTCGCTAGCAAAGAAGAATTACGCGAACATAAACTGTCTAACGAAAGATGCTGGCCCTACATCTGTTCTTTATGCAACACCAGATTTTTATACGTTAGGCTTAAAACGCAACATTTGAGTGAAGTCCACGGCGTTGATGACGCGAAAAAGTCTGAAGGCTCTATTACCCGAAAAATAACAAGAGAACGTATCATAGCGTCTAACCATACGATTAATTCATTAACTTCCAAAGAAGTACCATTAATCACCAACACCATGAACGAGGAAGAAGAAGAGCAGTTGAATGACTGGGCATTTCTTTTTGTTCTAGACAAGCAAAATGACCCGAATTTCATCGCTAAACGGAACGCCGAGCTTATAGTGAAATATTCCACCGTTTACCCCTTCAAGCTGCCCGAAGATAGCATGGTTTGTGTTTACTGTTGCGAAACGTACCCCGATCCTGCTGAGTTCAGGTCGCATATGGACGAGGAACATGATACCTTCAACCCTAAAATGGCGTTCAACCACTGCTCAGAAGGATTCATCAAAGTTGACTGCACTAACATTAACTGTCGAATATGTTTTAAACACTGCCAGAATTTGGAAGAAATCGCTGAACATTTACACAAAGACCATAATAAAGCTCTGGACTTAAATTTCGAAGTTGGACTCCAACCCTTTAAATTAGaagataataagtatttttgcgCCATTTGTCAGGCTAAGACCTTATGTCTAAGACAACTAAGCAGGCACACACAAATCCATTTCTGGAGATACACTTGCGAAGCTTGCGGGAAGTCTTACGCAACGAACACGGCCCTTCGGAATCATATAAGATTTTCTCACATCGGCACAGAGAAAATTTGCCGAAAATGCAAACGAACGTTCAGCTCTAATGAAGAGAAAAGGAAGCATATAACCGAATCGCCGCGATGCTGGTCCCATTTGTGCTGTATTTGCGGTCAGAGATTCATGTCTTGGCACGCTAAACAGACGCATTTGGCCGAGTGTCATGGTGTCGAAAAGAAATCTTTCGTGTGTCCGGAGTGTGGTCAAGTCTTTCACGAACGGAAAAAGTATAGATCGCACTTCAGATTGTCTCATACGGATGATAATTACGTGTGTTCTTGTTGCGGCATGAAATTCGAGACGAAAAAGATTTTGGAAGAACATAGGGTCTCCCATACGATGGAAAAGCTCTTCCCCTGTACAGTATGTCCTAAATCGTTCCCGAGAAAGAAGAATTTGATTCAGCACATGTGGATACATATGGAACACAAACGCTTTGAATGCAAGCTCTGCAATAAGAAGTTTAACCAAAAAGTCAAAGTAAATCCGATGTACGTCGCGCGACACAACGCCAAAATGATGATACAGTTTACGACCGCTTACCCCTTCAAGCTTCCAGAATCGTCTATGGTTTGCGTATATTGCTGCGATAGTTTCCCCGACCCGGCTATGTTTAGGGACCATATGCATACCGAACATCAGGAATTCAAAGTTAATATGGCTTTTAATCACGCTCCCGAaggagcaatcaaagttgattGCACGGATCTTAAATACAATAATCCGATGTACATCGCGAAACGGAACGCCCAGATCGTAGTACAATATATCACCGCTTACCCGTTTAGACTCCCGGAGAGTGCAATCGTGTGTGTTTACTGCTGCGAAAGTTTCGATGACGCGCCGCGCTTCAGGAAACATATGGAGGACGAGCACGATGAAGTCAACGTCAGGGTGGCTTTCAGTCACCTCCACGAAGGCTACATCAAAGTCGACAGCACAGACCTCCGCTGCAGAATATGCTTACAAACCTTCAACAATATAGAAGAGGCCGCGATTCATTTAAGCACGGCTCATAACAAAAATATCGCTTTCGACCACGATATAGGGCTCCAACCGTTTTACATGCAGTCCGATAAACTAGCCTGTGCGATTTGTAACTCCAAATCTTCAAACCTTAGAAGTTTGAGCAGGCATATTCACAAACATTTCTTTCAATGCACCTGTGAGCTTTGCGGCAAATCTTTTGCTTCGTCTGCCTCTTTGCAAAAACATCTCGAGTTCTCCTGCCCTTTAGTGCCAAAGCAGCGCCGGTGTCGGAAGTGCAAAATTATCTTATACTCCACCGAAGATCAGAAACTACATTTCGAGGCTTCTAGAAAGTGCAGACAGCATTTATGCCCAGTTTGCGGGGATAGGTTCAGCACTTGGAAGATAAAACGTGCTCATATGGAGAAAGAACACGGGGTACCTAATAAGGATTACCCCTGTCCCGAATGCGGTCTTGTCTTCACACAGCAGAACAAATTCAAAGCTCATTTCACGATAGTACATACAGACCAACATTTTGAATGTCCCAGTTGTGAGCGAAAATTCGACTCTAGATATGTATTGAATAGACATATGATAGTTCATTCTAACGAGAGGCTATTCTGCTGCGATATATGTTCAAAAAGTTTCCCGAGGAAGTCTACGCTGAGACAGCATATGTGGATACATAGTGAGGTTAAAAGGTTCGAGTGTAAGATTTGTGATAAACCCTTTAATCAGAAAGTTAGCTACAAGACACATATGAAGTCTTATCATCCAGAATTGGGGGTTATTGGATTGAGGGGCAAAGCCATTACTTGCGTCTACTGCTGCGAGGGGTACGAGGACCCAGCGCATTTCAGAAGGCATGTCGACGTCAACCATCAACAGTTCACCATTTCCACCGCCTTCCATCACATAGGAAGCACTAAAGAGTACCTAAAAGTCGATATCTACAACGTTAAATGTCGACTATGCTCCCAACCCTTCGAGAAAATCGATGACGTAGCCCAGCACTTAAAAGACGCACACCCAAGTTTCTCCAAGAAACTGGACCTCAATTTCGACGTTGGCTTACAACCGTACAAATTGAGGGGCAAAGCCATTACTTGCGTCTACTGCTGCGAGGGGTACGAGGACCCAGCGCATTTCAGAAGGCATGTCGACGTCAACCATCAACAGTTCACCATTTCCACCGCCTTCCATCACATAGGAAGCACTAAAGAGTACCTAAAAGTCGATATCTACAACGTTAAATGTCGACTATGCTCCCAACCCTTCGAGAAAATCGATGACGTAGCCCAGCACTTAAAAGACGCACACCCAAGTTTCTCCAAGAAACTGGACCTCAATTTCGACGTTGGCTTACAACCGTACAAgttggaaaaaaataactattgcTGCTACCATTGTGGGAAGAAAATGCCTACCCTTATCAAGCTCTGTCGCCACACGATTCTACATTATCAGCGGTTCACTTGCGATACTTGTGGACGAAATTATCTCAGTAACGAAGCGCTGAATTACCACATAAAATGCAGCCATTCGGGAAAGCATGTGTGTAGGAAATGCTGGACGGAATTCCCAACGCAGGAGAAGAAAAGAGCTCATGTCAAAATGTCGAAACCTTGCTGGACTTTCTGCTGCATCGTATGTGGCGAGAGGTTCCAGTCCTGGGAACATAAGCAGAAGCACCTAGAAGTAGCCCATGGACACGAGAAGATCGTCTATAAATGTCCTGAGTGTAACGAAAAATTCGcgtgtagaaaatatttttatacacattaCAAATTGGCTCACACTGATGAAGGGTTTCAGTGTGCTTGCTGCGGATTGAAGTTCAACACCCAAAAACGGCTAGACGACCATTCTCTTGGACATACAGGGGAGAAGCCGTTTATGTGTACTATTTGCTCCAAGAGTTTTGTGAGGAGTAAGAGTCTGACGCAGCATATGTGGATTCATAGTGAAACGAAGAGATTTGTCTGTCTACTCTGTGAAAAGCAGTTCGCCCAGAAAGTCAGTCTCAAAGGCCATATGAAAACCACACATCCAGATGTTAATTTTGACTTATAA
- Protein Sequence
- MNDEGPFLFVLDYDPLVEARQNAKQILKYSTVYPFRLQISQMMCVCCRQCFEDPELFRRHMRLDHRANVLSFTPGHHSLGLREYLKADCTDLGCKICAKRFDDVKSIAEHLSSVHHKKINFNFDFGIQSFKLGREKWVCASCNKKFPCLRSLSRHNSSHYHKYTCENCGRSYISRDSLRSHVLLSHSQEKICVKCKESFASKEELREHKLSNERCWPYICSLCNTRFLYVRLKTQHLSEVHGVDDAKKSEGSITRKITRERIIASNHTINSLTSKEVPLITNTMNEEEEEQLNDWAFLFVLDKQNDPNFIAKRNAELIVKYSTVYPFKLPEDSMVCVYCCETYPDPAEFRSHMDEEHDTFNPKMAFNHCSEGFIKVDCTNINCRICFKHCQNLEEIAEHLHKDHNKALDLNFEVGLQPFKLEDNKYFCAICQAKTLCLRQLSRHTQIHFWRYTCEACGKSYATNTALRNHIRFSHIGTEKICRKCKRTFSSNEEKRKHITESPRCWSHLCCICGQRFMSWHAKQTHLAECHGVEKKSFVCPECGQVFHERKKYRSHFRLSHTDDNYVCSCCGMKFETKKILEEHRVSHTMEKLFPCTVCPKSFPRKKNLIQHMWIHMEHKRFECKLCNKKFNQKVKVNPMYVARHNAKMMIQFTTAYPFKLPESSMVCVYCCDSFPDPAMFRDHMHTEHQEFKVNMAFNHAPEGAIKVDCTDLKYNNPMYIAKRNAQIVVQYITAYPFRLPESAIVCVYCCESFDDAPRFRKHMEDEHDEVNVRVAFSHLHEGYIKVDSTDLRCRICLQTFNNIEEAAIHLSTAHNKNIAFDHDIGLQPFYMQSDKLACAICNSKSSNLRSLSRHIHKHFFQCTCELCGKSFASSASLQKHLEFSCPLVPKQRRCRKCKIILYSTEDQKLHFEASRKCRQHLCPVCGDRFSTWKIKRAHMEKEHGVPNKDYPCPECGLVFTQQNKFKAHFTIVHTDQHFECPSCERKFDSRYVLNRHMIVHSNERLFCCDICSKSFPRKSTLRQHMWIHSEVKRFECKICDKPFNQKVSYKTHMKSYHPELGVIGLRGKAITCVYCCEGYEDPAHFRRHVDVNHQQFTISTAFHHIGSTKEYLKVDIYNVKCRLCSQPFEKIDDVAQHLKDAHPSFSKKLDLNFDVGLQPYKLRGKAITCVYCCEGYEDPAHFRRHVDVNHQQFTISTAFHHIGSTKEYLKVDIYNVKCRLCSQPFEKIDDVAQHLKDAHPSFSKKLDLNFDVGLQPYKLEKNNYCCYHCGKKMPTLIKLCRHTILHYQRFTCDTCGRNYLSNEALNYHIKCSHSGKHVCRKCWTEFPTQEKKRAHVKMSKPCWTFCCIVCGERFQSWEHKQKHLEVAHGHEKIVYKCPECNEKFACRKYFYTHYKLAHTDEGFQCACCGLKFNTQKRLDDHSLGHTGEKPFMCTICSKSFVRSKSLTQHMWIHSETKRFVCLLCEKQFAQKVSLKGHMKTTHPDVNFDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -