Hvir010723.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Heliothis virescens
Gene Symbol
-
Assembly
GCA_002382865.1
Location
NWSH01002527.1:41481-82927[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 7.6e-06 0.00045 20.3 1.8 1 23 204 226 204 226 0.99
2 29 0.00023 0.014 15.6 0.6 2 20 255 273 254 275 0.92
3 29 0.0012 0.07 13.4 0.1 2 23 306 328 305 328 0.96
4 29 0.0082 0.49 10.7 0.8 1 23 376 399 376 399 0.97
5 29 0.043 2.6 8.4 0.5 1 23 419 441 419 441 0.95
6 29 0.0017 0.1 12.8 4.2 2 23 482 504 481 504 0.93
7 29 0.0013 0.075 13.3 4.1 2 23 544 566 544 566 0.97
8 29 0.0012 0.07 13.4 0.3 1 23 616 639 616 639 0.97
9 29 0.00031 0.019 15.2 0.1 1 23 692 714 692 714 0.97
10 29 0.0059 0.35 11.2 8.3 1 23 725 747 725 747 0.98
11 29 0.011 0.66 10.3 1.3 2 23 759 780 758 780 0.96
12 29 0.0021 0.13 12.6 1.4 1 23 790 812 790 812 0.98
13 29 0.0078 0.46 10.8 8.9 1 23 841 863 841 863 0.96
14 29 0.00031 0.019 15.2 2.8 1 23 874 896 874 896 0.98
15 29 1.2e-05 0.0007 19.7 0.5 1 23 904 926 904 926 0.98
16 29 0.00047 0.028 14.6 0.2 2 23 946 968 945 968 0.97
17 29 1 60 4.1 0.3 1 23 986 1008 986 1008 0.89
18 29 0.13 7.8 6.9 4.8 1 23 1015 1037 1015 1037 0.98
19 29 0.0017 0.1 12.8 2.8 2 23 1048 1070 1047 1070 0.95
20 29 0.011 0.64 10.4 0.2 2 23 1093 1114 1092 1114 0.95
21 29 1.3 80 3.8 3.7 2 23 1157 1179 1156 1179 0.95
22 29 0.0016 0.093 13.0 0.3 2 23 1195 1216 1194 1216 0.95
23 29 3.1 1.8e+02 2.6 2.7 5 23 1226 1244 1223 1244 0.94
24 29 0.0029 0.18 12.1 0.9 2 23 1255 1277 1254 1277 0.96
25 29 0.052 3.1 8.2 2.2 2 23 1294 1312 1294 1312 0.92
26 29 0.88 52 4.3 1.7 2 21 1316 1335 1315 1336 0.93
27 29 0.34 20 5.6 1.0 2 23 1385 1406 1384 1406 0.93
28 29 0.0024 0.14 12.4 0.8 2 23 1417 1439 1416 1439 0.95
29 29 4.8 2.8e+02 2.0 1.4 2 14 1477 1489 1476 1496 0.81

Sequence Information

Coding Sequence
ATGGCACTCAAGCTCGGAAAATGCAGGCTATGCCTCAAGCTCGGGGACTTTTACTCCATCTTCACGGTCGACAATGCCTTGCAGCTTGCGGAGATGGCAATGGAATGCGCCCGGGTGAAAATATATGATGGCGACGGGCTGCCAGATAAAGTGTGTTCAGAGTGCATTCAGAAGCTCAGCAGCGCTTACATCTTCAAGCAGCAGTGTGAGCGAGCTGACCAGGAGCTACGCCGCAACTATGTGCCACCACCAGGATTTAGCATCCGGTCGGCCAGTCCAACTCCACCTAACAGGCAAAGCAGCGATTCCGCCTTTTCCAATCATACCGACAGCTCCAACTTGACCAAAGCTCTGTCTGCCTCTGAGGAAAAAGTGACACCCGTTGCTAGAACAAGGAAGCGTAGCATGGACAGCGTCGGCAATGCATCCACTGGAGCTTCCAGCGACTACCGGCCCAGCGGCTCCAAGCGCGTCGAGGAGCTCAGAAAGAGTTACAAAAGGCCCAGAAAGCAGTCGGGCAACATCTCTCAGTTAGACTCCGATTACGATGACAATAGCGCCCCGTACTTACCCGAAACTGATTCTGACGAGcctttacttaaaaataactacaaatgCGACCACTGCCCCAAAAAGTTTCCATCTGCAAGAAGTCTCGTTAACCATAAGAGGATACATGAAAAAAAGGAAGCACTCGGACAAGACGCCGTCGTCGATATACCGCAACAGACTGGCGATGCTACAGACGTAGAAGATAAACTCAACTGCAACAAATGTGGGAAGACATTCAAGTTGAAGATCATGTTGAAGCGTCATTATGAAATATGCGGGAAGACCACCAGTCCCGTCAAGTCTCCACAGAAGGAGTTGCTCATTTCACTAGAGCCGATTGACGGCATGACGAATCGGAACATAGTGTGTGAACTGTGCAATGCCAAATTTAAGGCTGTCGATAATCTAGCAAAGCACATGAAGGTAGTTCACGCTGCGGTATTGAAGAGAGAACATAAACGGGAAAATGGAAAGGTGGCGGTGCCGTGTCTGTTCTGTCAGACGCCGTTCGACGATTATTACGTTCACAGTGCGCATTTCAACTCGTGCTCCAACAGGGACGACAGCGTGCCGTATGAGTGTCCGATATGTAAAAAGCTAATGTCGAGGAAGGCTTCTTACTTCCAACACCTTAAAAACATTCACTTCGAGCCTCGCATGTCGCAAGGGAGGGCGGCTGTGGAGCCCGACGCGCAGGACTACCACGAGTGCAGGATGTGCTTCAAGAAGCTCGCCTCGCAGGAGCTGCTCATCACGCACCTAGCCGCGCACGTCTCCAACATCGAGGATAATGATGGCGGAGCTGACAATGACTCTAGGGCAAGCACCATGGAAGATTCTGCATCAATCCACTCAGTACCAAGTCAGTCACACACCCCCACCCGTCTACTGAAATGCAAAATGTGCAACAAAGAGTTCAAATATAAGAGATCTCTAGAGACTCACGAGGCGCGGTGTCATTCTGAAGTACCTATAGAAGTGAAGGCAGAACCTCCTGACAAGGCATCAACGAGCCTGCTTAGCGAGACAGCGTACCGCCAGACAGAGTCAGAATCTAGTCAAGAAGAGGAGGACAACACGTGCGACATCTGCGAGAAACAGTTCTCGTACCGCAGGCTGCTGCTGCACCACAAGCGAACCAAGCACAACATGAGCTCGGGGCACAAGCGCGCCAAGATCTACCTGAAGGACTGCTCCGTGCGCTGCCTCATCTGCGACCTCGACATGAAGGTCGCCGGCATCAACGAGCACAACCAGATGCACACCGCCAAGAACATGAAGCCTCGCAACATCTACACGTGCGCCGAGTGCGGGGACACCTTCAAGAGCTGCGTCGCGCTCGCTAACCATATCAAACTTATACACAGGCTCAAACAGAAGCGGGTAGAAGAGACCGTCAACCCGTCggatttttgtgaagtcgttgTGGCGAAAGCGGAACCCCTGGACTGGATCCAGAGTCACAACGACTTTGGTGAGGTTCCGGGCGCGGAGAGCAAGCCGCTGGTCGACCTGAGCGGCTTCACCTGTCCCATCTGCGGCAAGAAGATGGCCACGCTTATATCTCTGAAGAGGCATGTCAACTGGCACACCAATGTTGGTAATAACATTGAAAAGAAGTACCAGTGCTGTGTCTGCAATGAGGCGTTCAAGTTCCAATGCCACTACAAGATCCACATGCGCGAGCACTACCACGACACGAACCTGGACCCGAAGCACCTGACCTGCACCATCTGCGGCCGCCGCAGCAAGCACCTCCGCGCCGCGCAAGCGCACATGAACTTCCACAAGCAGACGCGCTTCCAGACCAAGGACTACCAGTGCTCCATCTGCGAGCGCGTCTTCCAGCACCGTAAGGTGTACCTCTCGCACATGGCCATACACTACAAGAAGGGTGACAGCGTTCAGAACACGGTGGTGGGCGACGCTCTGCCCATCAACGCGGACAAACAGGTGTACGACGGCACCCACACCTGCCATCACTGCGGCAAAGTGTGCGACTCAGAGAACTCACTCAAACATCACTTAATATGGCACACATCCAAGACTTTCCTGTACGGAGCCCGGCACGAGTGCAGCATCTGCAAAGTCAAGTTCACTAACAAAAGACGACTCGAACTCCACATCAGATCGCACTACGAAGACGACAATGGCCCCTacaagtgtaccatttgcggcAAGGGCTACACTGACGAAGGATACTTCCAGAAACACGTCAAGGGACACAACTTCGATCACCAGTCCCACAAAAAGAGGATAGAGAAAATCCGCAAGGATAAAGTCAAATGTCCAATATGTACGCGGTATTATCCAGACTTGGTGAAACTAATCCGTCACTTGAGACGGACGCATCCTGAAAGTAAGATGATCAAAGCCGACCCCGACGCTCCACCGCAATCGTACTTTTCGTGTAAATTGTGCGCCAAAGTATTTCTGGACGAACGCCGGCTACAGTCACACGAGGAGGCTCACCTTAGGAAGCCAGAGTTCTTCAAATGCAAGTTCTGTGGCAAGAAGACGATATCGCTGCGGAATCATCGCTTGCACATAAAGAGTCACTTGGCGCAGAAACATTTCGACAGCCCGCTCAAGTGTCCGCACTGTGACGAGACGTTCGTGAAGGGCTACGGGCTGCACCACCACCTGCGCGACGCACACAACATCGACGAGAACTGGATCGCCGACCGCTCCGACCAGCCCCTCACCGGACCGCTTAAGGAACTGCAATGCTCCATATGCATGAAGGTCCTCGCCAGCAAGGGCAACTACGAGCGACACATCGACTACCACAACTCTCTGAGGTGTAACTACTGCTTCGATTACTTCAGCTCGCTCAGGTTCCTAGAAGGGCATCTAGCATTCTCATGCgaaaagaaaaagcttttaggCGACACAGAAGTTCACCCAAGGAGAGTGAAATGCACTATTTGTTACAAAGCATTCCATGTCCAAGTGAAACTAGACTGTCACCTGCGCACGCAACACGGCATTATAGTCAACAGGGAAGCGTCCGCGGGCAAGCAAGAACTTGTCTGCGATTATTGCTTCAGAGTTTTCGAAAACGAGTACGCTCTAAACACGCATAAAATTTACCACCGAACTGTTGGATACTACGGGTGTATTTACTGCAGTAAAAAGTTCGGCACGATGGTATTGTATCGGAAACATAAGAACCATCACTTTGCACAGCTCAACGTAGATAACCCGACCAAGTGCGAACATTGTGACGAGACGTTCGTCGCCTTCCGGGATATGATAACCCACATGCGGGAGGAGCACGGCGATGACAAGGAGTGGTTCACCGAGCCGAGGGAGTCCATCGAGGAGACCTGCCCTATATGCAACAAGCGATTCTATAACCTGCACAGACATTTGGCTTACCACGAGGAAAATAAGTGCAAGAAATGCAGTGAATATTTCTACTCCCGGGTGGATTACGATAACCATCTTTGTGCCATCGAGAGTGATGACGAAGGCACGGGATATGTAGTAAACGAAGATACTTTTAAATATGAGGAATGCAAGTTCTGCTTCAAACCTATCACCAAGAAGAGTACCAAACGGTTACACGACCAGATACATAAAGGATCAGGTTCTATATCTTGTAGGTTCTGCACTCTCAAGTTTAAAACTATGGACGCCTTTAACATACACGCATTCTCTCATCGAAGTAGAAAATACACTAAGAAACCGCTAAAATGCCGAAAGTGCGGCGAGAAGTTTGTTAAATACGGACCATTCATGAAGCACATGAAGCTAGTTCACAAGTGCATTAAGAAGATGCACTACAGGGCGGTGGTGAAGCCTGACAAGTGTGTTGTGTGTGGAGACGACTTCCCCAACCTGCACAACCATTACCGCGCTCACCTGCTGAACCAGTGCCAGGGCTGCCGCAAGTACTTCACGTCCTACAAGGTAATATCTGCGCACGAGTGCGGCAAGGAGGACTTAGATCCCTCTAAAGTGTTCACGTGTGACGCCAACTTGAACGAGCTCATAAACACGTATGTACCTACTGATGAGAAAGATGATGAGAAGTACTATGGCTATactgatgatgaagaagaagatGATGTTGATCCTCAAGTGTTCGGGGAAGATGAGGAGAGTCAGGAAAGTAAGGACATACCTATGATCCAGTCGCCGATAATATCCGATGTACTGTCGCTCTTTAAGACGGAGACGAACGGCCTGGATGTCCCGGGTGATAAGACTGACCACGTGGTCAATATAACTGATGACGACTCGGTTGATATCGATGATGGTCTTATACCTGTCGTTGTTGTTATTGATGATGATTAG
Protein Sequence
MALKLGKCRLCLKLGDFYSIFTVDNALQLAEMAMECARVKIYDGDGLPDKVCSECIQKLSSAYIFKQQCERADQELRRNYVPPPGFSIRSASPTPPNRQSSDSAFSNHTDSSNLTKALSASEEKVTPVARTRKRSMDSVGNASTGASSDYRPSGSKRVEELRKSYKRPRKQSGNISQLDSDYDDNSAPYLPETDSDEPLLKNNYKCDHCPKKFPSARSLVNHKRIHEKKEALGQDAVVDIPQQTGDATDVEDKLNCNKCGKTFKLKIMLKRHYEICGKTTSPVKSPQKELLISLEPIDGMTNRNIVCELCNAKFKAVDNLAKHMKVVHAAVLKREHKRENGKVAVPCLFCQTPFDDYYVHSAHFNSCSNRDDSVPYECPICKKLMSRKASYFQHLKNIHFEPRMSQGRAAVEPDAQDYHECRMCFKKLASQELLITHLAAHVSNIEDNDGGADNDSRASTMEDSASIHSVPSQSHTPTRLLKCKMCNKEFKYKRSLETHEARCHSEVPIEVKAEPPDKASTSLLSETAYRQTESESSQEEEDNTCDICEKQFSYRRLLLHHKRTKHNMSSGHKRAKIYLKDCSVRCLICDLDMKVAGINEHNQMHTAKNMKPRNIYTCAECGDTFKSCVALANHIKLIHRLKQKRVEETVNPSDFCEVVVAKAEPLDWIQSHNDFGEVPGAESKPLVDLSGFTCPICGKKMATLISLKRHVNWHTNVGNNIEKKYQCCVCNEAFKFQCHYKIHMREHYHDTNLDPKHLTCTICGRRSKHLRAAQAHMNFHKQTRFQTKDYQCSICERVFQHRKVYLSHMAIHYKKGDSVQNTVVGDALPINADKQVYDGTHTCHHCGKVCDSENSLKHHLIWHTSKTFLYGARHECSICKVKFTNKRRLELHIRSHYEDDNGPYKCTICGKGYTDEGYFQKHVKGHNFDHQSHKKRIEKIRKDKVKCPICTRYYPDLVKLIRHLRRTHPESKMIKADPDAPPQSYFSCKLCAKVFLDERRLQSHEEAHLRKPEFFKCKFCGKKTISLRNHRLHIKSHLAQKHFDSPLKCPHCDETFVKGYGLHHHLRDAHNIDENWIADRSDQPLTGPLKELQCSICMKVLASKGNYERHIDYHNSLRCNYCFDYFSSLRFLEGHLAFSCEKKKLLGDTEVHPRRVKCTICYKAFHVQVKLDCHLRTQHGIIVNREASAGKQELVCDYCFRVFENEYALNTHKIYHRTVGYYGCIYCSKKFGTMVLYRKHKNHHFAQLNVDNPTKCEHCDETFVAFRDMITHMREEHGDDKEWFTEPRESIEETCPICNKRFYNLHRHLAYHEENKCKKCSEYFYSRVDYDNHLCAIESDDEGTGYVVNEDTFKYEECKFCFKPITKKSTKRLHDQIHKGSGSISCRFCTLKFKTMDAFNIHAFSHRSRKYTKKPLKCRKCGEKFVKYGPFMKHMKLVHKCIKKMHYRAVVKPDKCVVCGDDFPNLHNHYRAHLLNQCQGCRKYFTSYKVISAHECGKEDLDPSKVFTCDANLNELINTYVPTDEKDDEKYYGYTDDEEEDDVDPQVFGEDEESQESKDIPMIQSPIISDVLSLFKTETNGLDVPGDKTDHVVNITDDDSVDIDDGLIPVVVVIDDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00785388;
90% Identity
-
80% Identity
-