Hvir013708.1
Basic Information
- Insect
- Heliothis virescens
- Gene Symbol
- -
- Assembly
- GCA_002382865.1
- Location
- NWSH01000112.1:169743-178032[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0012 0.073 13.3 1.5 1 23 238 261 238 261 0.93 2 13 0.0057 0.34 11.2 1.6 2 23 265 286 265 286 0.98 3 13 2.5e-05 0.0015 18.6 1.8 1 23 291 314 291 314 0.96 4 13 3.9e-05 0.0023 18.0 3.6 2 23 321 342 320 342 0.96 5 13 2.8e-07 1.7e-05 24.8 0.2 3 23 351 372 350 372 0.97 6 13 1.6e-05 0.00095 19.2 6.4 1 23 378 400 378 400 0.98 7 13 0.005 0.3 11.4 1.2 1 23 410 432 410 432 0.97 8 13 0.0093 0.56 10.5 1.4 1 23 436 459 436 460 0.96 9 13 1.3e-06 7.8e-05 22.7 0.1 1 23 463 485 463 485 0.95 10 13 1.8e-06 0.00011 22.2 1.3 1 23 491 514 491 514 0.95 11 13 0.11 6.7 7.1 0.6 2 12 526 536 525 545 0.86 12 13 3.9e-05 0.0023 18.0 0.2 3 23 551 572 549 572 0.91 13 13 2.8e-05 0.0016 18.5 1.3 1 23 577 600 577 600 0.96
Sequence Information
- Coding Sequence
- atgtCTGAAATATGGAACTTGAGTACGTTGTGTCGTTGTTGTCACGCCGATGGCCACTTCAAGAGCTTAAAACTTCCATACCAAGGGATGAACGATGTTGAAATTTATGATATTATGTTGCGAGAAACATTGGGAGTATCTATTTCAACACCTGCTTTAGAAGCAAGTCACACAATATGTGATGATTGTATTGAGAGGCTTCGGGACGCTACCCACTTCAAGAATCAAGTGCTTATGTGTGAAGAAAAGTTTAAAGTATATTGTCAAAaTGAACAATTCCTTGCTACACAAGATGTGAAGATAGAACTTAATGATGACAGCCAAGATAATCACTGCGATGACATACAAATGGATACTGGACATTATGAAGATGATAAAGTCGAGGTCAAAAAAGAATATTCAATAGAAGTAGACTTTGGACATCCGATTGAAGAATTGAAAAATGaaaatccGACTGAGGAAGGGAATATTAAAGTGTCTGAAGTTTCAATCGCGTCTAAGAAGGCTTCCACtaaaaaaagagtaaaaattgagaaaaatattacgAAAGaaaaaccgACTGAAGAAGGGAATATTAAAGTGTCTGAAGTTTCAATCGCGTCTAAGAAGGCTTCCAgtaaaaaaagagtaaaaattGAGAAAAATGTCACAAAAGACCGTCGTATCGACGATTCACTAATAACAAAAGTGGAAACAGAAAACGGGACCCAATTTTCCTGCAAAACTTGCGGTGAACAATACACagacaaacaacaaataaaacaacatatatatttaaaacacaCCCCACGCAAATGTACAATCtgcgaaataaaattaaaaaattatttatctttaagaAAACATCTGCAAAGACATAAGATTCAAAAATTTCAATGTCGccattgcgagaaaaaattttCAGAACAAACTGCATTAACTGATCACatgataaacatacatacaaaacaagATGTATGTATTTGCGATATTTGtcaaaaacagtttaaaaataagctAACGCTCCAAAGACATCTAAGATTACACTACGGgacaaataaaaagaaactcTGTGAAATATGCGGTAAATCTTTTAACGATAAATCTAATTTAGAAAGCCACGTCCAATCCGTTCATGAGAAATTGCGGCCACATAAATgtgaaaaatgtaataaaagttaTAGCACAAAAAGGCACTTGAAAGACCACTTAATAATGCACGATGGTGTAAAATTAGATAGTCCGGTTCACACATGTGATATTTGTGGGCACATGTTAGTGGACGCTCGACAAATGATGGTACACAGATTAAAGCATGAAAATAAATTCATGTGTCCTGTCTGTCAGTTAGTTTTCGAAACTTTTAAAGCGAGAAAAGATCATTTATTAACTTACCATCATAAGATATATCTTTGTCCTATATGTGGCAAAGGATTCGTAGGTAAATACTCATTGAATCGTCATATTAACGACCATAATGGGATAAAACGGTTTGCTTGTGAAGTCTGTAATGAGAAATTTTCCCAAAAATCAGGTTTAACGCGACATATGTTTAGGAAACATAATCCTGAGAATAATTATAAAGAGGAGAAAACTAAATGTGATATTTGTAAGAGAAGTTTTAGGAATATTGTGGTGCATATAGATAGGCATCACTGCAATCGGATTGCCTGTAGCATTTGTGGTCAAACTTATGCTACGAATAGCGCTTTAAATAGGCATAAAGCTCAAAAACATTTCGGTAGGACTTTCGATTGTGAGGTTtgtggtaaaaaatatatgcaGAAGTCTAAATTGAATACGCATCGGCTTAAAGTGCATAAAATTAAGAATGAAGTTAATAATTCTGACAGTGTTTCGGATAATCTGACTTTAAATGTAATGGAATAA
- Protein Sequence
- MSEIWNLSTLCRCCHADGHFKSLKLPYQGMNDVEIYDIMLRETLGVSISTPALEASHTICDDCIERLRDATHFKNQVLMCEEKFKVYCQNEQFLATQDVKIELNDDSQDNHCDDIQMDTGHYEDDKVEVKKEYSIEVDFGHPIEELKNENPTEEGNIKVSEVSIASKKASTKKRVKIEKNITKEKPTEEGNIKVSEVSIASKKASSKKRVKIEKNVTKDRRIDDSLITKVETENGTQFSCKTCGEQYTDKQQIKQHIYLKHTPRKCTICEIKLKNYLSLRKHLQRHKIQKFQCRHCEKKFSEQTALTDHMINIHTKQDVCICDICQKQFKNKLTLQRHLRLHYGTNKKKLCEICGKSFNDKSNLESHVQSVHEKLRPHKCEKCNKSYSTKRHLKDHLIMHDGVKLDSPVHTCDICGHMLVDARQMMVHRLKHENKFMCPVCQLVFETFKARKDHLLTYHHKIYLCPICGKGFVGKYSLNRHINDHNGIKRFACEVCNEKFSQKSGLTRHMFRKHNPENNYKEEKTKCDICKRSFRNIVVHIDRHHCNRIACSICGQTYATNSALNRHKAQKHFGRTFDCEVCGKKYMQKSKLNTHRLKVHKIKNEVNNSDSVSDNLTLNVME
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -