Hvir012446.1
Basic Information
- Insect
- Heliothis virescens
- Gene Symbol
- -
- Assembly
- GCA_002382865.1
- Location
- NWSH01002560.1:71198-76430[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.00035 0.021 15.0 0.8 1 21 3 23 3 24 0.96 2 27 0.86 52 4.3 0.1 1 23 65 88 65 88 0.94 3 27 0.92 55 4.3 0.3 2 23 114 136 113 136 0.95 4 27 0.029 1.8 9.0 0.1 2 23 199 221 198 221 0.96 5 27 0.38 22 5.5 0.1 2 23 245 267 244 267 0.95 6 27 6.1e-05 0.0036 17.4 0.5 2 23 291 312 290 312 0.97 7 27 0.1 6 7.3 0.5 1 21 316 336 316 337 0.91 8 27 0.62 37 4.8 0.1 1 23 378 401 378 401 0.94 9 27 0.15 9 6.7 0.1 2 23 427 449 426 449 0.95 10 27 0.0049 0.29 11.4 0.3 2 23 473 494 472 494 0.94 11 27 1.7e-05 0.001 19.2 0.0 1 23 498 521 498 521 0.97 12 27 0.0054 0.32 11.3 0.6 1 23 525 548 525 548 0.98 13 27 2.6 1.6e+02 2.8 0.6 1 23 553 578 553 578 0.88 14 27 0.17 10 6.6 6.7 1 22 587 608 587 610 0.88 15 27 0.0067 0.4 11.0 0.2 1 23 620 643 620 643 0.96 16 27 0.029 1.8 9.0 0.1 2 23 720 742 719 742 0.96 17 27 0.38 22 5.5 0.1 2 23 766 788 765 788 0.95 18 27 6.1e-05 0.0036 17.4 0.5 2 23 812 833 811 833 0.97 19 27 0.1 6 7.3 0.5 1 21 837 857 837 858 0.91 20 27 0.62 37 4.8 0.1 1 23 899 922 899 922 0.94 21 27 0.15 9 6.7 0.1 2 23 948 970 947 970 0.95 22 27 0.0049 0.29 11.4 0.3 2 23 994 1015 993 1015 0.94 23 27 1.7e-05 0.001 19.2 0.0 1 23 1019 1042 1019 1042 0.97 24 27 0.0054 0.32 11.3 0.6 1 23 1046 1069 1046 1069 0.98 25 27 2.6 1.6e+02 2.8 0.6 1 23 1074 1099 1074 1099 0.88 26 27 0.17 10 6.6 6.7 1 22 1108 1129 1108 1131 0.88 27 27 0.0067 0.4 11.0 0.2 1 23 1141 1164 1141 1164 0.96
Sequence Information
- Coding Sequence
- ATGAATTACAGCTGCGATAAATGCGGCACAACCTTTGTTTCCGATTATGCGTTAAAAGACCACCATAGGCAGGTCAAGTGCTTCCGAACAGCTTATAAAGCAAGGAATGGGAGGGTCCTGAAACCTAGAACGAACGCAGAAATAATTCTACAATGTTCCACGGCTAGTCCGTTTAGGACGTGGAAGAGTAACTTCAATTGTGTCTTCTGTAGAGTCCAGAGTAACGATCCAAGTGGACTTCGAATGCATGTTGTCACTATACACGCGAATTATGACGTCAAAGCAGCTTTCTACAAAAAGTTGGGGAAAGACTTCCTCAATATTGATGTCACTGATCTTCAATGCAAATTATGCTTCATGCCTATAGATACTTTTGATAGCCTGATTTACCATTTAAAAAATGATCATCAACAACCTATAAATACTGATGCTCAGTTAGggtcCACGAAGGATGACGGACCTAATCAGAACGAAATTAAACCAAAACAGAGATTGTTCGAACGGTCTGTCGGTCAGAACCCGCAAAGGCAAAACGCTGTGCTTGTCCTCAAGCATTCGACAGCGTTCCCTTTTAAGACCCGTTTCAATAGGATCGTCTGCTCTTACTGCCATGACGAGTTCGAACCGATGGCAGCTTTGAGAGACCACATGAAAACCGCACATTCCAACGCTGACTACAACAGCGCTTTCTATAAAGTCTATGACGCCCTAAAAGTTGAAATCACTGACTTAAAGTGCACTGTATGTTCCCAAGAAATTCCTAATATAGACAGCTTCATGACCCACATTTCTCGAGATCACAAAATCAAAGTTAATTTTGACGTACCTTTTGGGGTACTTCCATATAGACAAGGCACCTCAGGGAGATGGACTTGCCTAGAATGCGATAAAACCTTTCCAAAATTCTCTCAAATCAACGTCCATTTGCGAACCCATATGAAGATTTTTACTTGCGAAAAGTGTGGAGCTACATTCTTATCGGACCACGGTTTGAGACAGCACGAACGTAATTTTAAATGCTACAAATCTTCTTATAACCCTCGTTTTGGTAAAGCCTTGAAATACAAAAGCAATACAGAGATTATTCTCGAATGTTCTACCGCCTGTCCTTTTAGAACTTGGGGCCAGAATTTCAACTGCGTTTTCTGCCGCGTACAATCGAATGATCCTATAGGATTGAGAGCTCATATGGCGTCCCGTCACGCGAATTTCGATATACAACTAGTCTTCAGTAGGAAGATTCGAAAGGAGTTTTTGAAGGTCGATATAACAGATTTACAATGCAAACTATGTTTTATACCCATCGATACTTTAGATGACTTGATGGCACATTTGAAGAATGATCACAAGCAACCTTTGAATGCTGATGTTCAACCAGGAGTGCTTCCCTTTAAGCTGAATGACGGGTCTAATTGGAAATGTGCGATATGCAAAATACAGTTTTCAGATTTCATATCGTTGAAAAAACATACGGCTGAACACTACCAGAATTATGTCTGCGATACTTGTGGTGAAGGCTTCATAACAGAATCTGCGTTAAAAGCGCACACGAAAATACCTCATGATAACAAATACACATGCAGTCGTTGTGTGGCCACATTCACCACTTTAGAAGAACGGAACATTCATATAAAAACTCAGCACACAACGCTACCTTACATGTGTGTGTACTGCAAAGAGAAACCAAGGTTTGCGACCTGGGAGTTGAGGAAACGACATCTCATGGAGTTTCATAACTACAAGCCTGGAGCAGAAATGTACGAGTGTACGACTTGCCATATGACCTTCAAAACTCGTTCGCAGAAATATCATCATAATGTTAAAACTCATAGGACGAAAAAGGAGACAGAGTATAGCTTTCCTTGTGGCAGTTGTTCTAGAGCGTTCGCTTCGAAGTTGTCCTTGGATAAGCACATCGCGAAAAAGCACTTCCATTCCATAATTATAAGACCGGGGCCGATAAATACGATTGCTCGACTTGCCAAAAGTCCTTTAAGACCAGggtcCACGAAGGATGACGGACCTAATCAGAACGAAATTAAACCAAAACAGAGATTGTTCGAACGGTCTGTCGGTCAGAACCCGCAAAGGCAAAACGCTGTGCTTGTCCTCAAGCATTCGACAGCGTTCCCTTTTAAGACCCGTTTCAATAGGATCGTCTGCTCTTACTGCCATGACGAGTTCGAACCGATGGCAGCTTTGAGAGACCACATGAAAACCGCACATTCCAACGCTGACTACAACAGCGCTTTCTATAAAGTCTATGACGCCCTAAAAGTTGAAATCACTGACTTAAAGTGCACTGTATGTTCCCAAGAAATTCCTAATATAGACAGCTTCATGACCCACATTTCTCGAGATCACAAAATCAAAGTTAATTTTGACGTACCTTTTGGGGTACTTCCATATAGACAAGGCACCTCAGGGAGATGGACTTGCCTAGAATGCGATAAAACCTTTCCAAAATTCTCTCAAATCAACGTCCATTTGCGAACCCATATGAAGATTTTTACTTGCGAAAAGTGTGGAGCTACATTCTTATCGGACCACGGTTTGAGACAGCACGAACGTAATTTTAAATGCTACAAATCTTCTTATAACCCTCGTTTTGGTAAAGCCTTGAAATACAAAAGCAATACAGAGATTATTCTCGAATGTTCTACCGCCTGTCCTTTTAGAACTTGGGGCCAGAATTTCAACTGCGTTTTCTGCCGCGTACAATCGAATGATCCTATAGGATTGAGAGCTCATATGGCGTCCCGTCACGCGAATTTCGATATACAACTAGTCTTCAGTAGGAAGATTCGAAAGGAGTTTTTGAAGGTCGATATAACAGATTTACAATGCAAACTATGTTTTATACCCATCGATACTTTAGATGACTTGATGGCACATTTGAAGAATGATCACAAGCAACCTTTGAATGCTGATGTTCAACCAGGAGTGCTTCCCTTTAAGCTGAATGACGGGTCTAATTGGAAATGTGCGATATGCAAAATACAGTTTTCAGATTTCATATCGTTGAAAAAACATACGGCTGAACACTACCAGAATTATGTCTGCGATACTTGTGGTGAAGGCTTCATAACAGAATCTGCGTTAAAAGCGCACACGAAAATACCTCATGATAACAAATACACATGCAGTCGTTGTGTGGCCACATTCACCACTTTAGAAGAACGGAACATTCATATAAAAACTCAGCACACAACGCTACCTTACATGTGTGTGTACTGCAAAGAGAAACCAAGGTTTGCGACCTGGGAGTTGAGGAAACGACATCTCATGGAGTTTCATAACTACAAGCCTGGAGCAGAAATGTACGAGTGTACGACTTGCCATATGACCTTCAAAACTCGTTCGCAGAAATATCATCATAATGTTAAAACTCATAGGACGAAAAAGGAGACAGAGTATAGCTTTCCTTGTGGCAGTTGTTCTAGAGCGTTCGCTTCGAAGTTGTCCTTGGATAAGCACATCGCGAAAAAGCACTTCCATGTATGA
- Protein Sequence
- MNYSCDKCGTTFVSDYALKDHHRQVKCFRTAYKARNGRVLKPRTNAEIILQCSTASPFRTWKSNFNCVFCRVQSNDPSGLRMHVVTIHANYDVKAAFYKKLGKDFLNIDVTDLQCKLCFMPIDTFDSLIYHLKNDHQQPINTDAQLGSTKDDGPNQNEIKPKQRLFERSVGQNPQRQNAVLVLKHSTAFPFKTRFNRIVCSYCHDEFEPMAALRDHMKTAHSNADYNSAFYKVYDALKVEITDLKCTVCSQEIPNIDSFMTHISRDHKIKVNFDVPFGVLPYRQGTSGRWTCLECDKTFPKFSQINVHLRTHMKIFTCEKCGATFLSDHGLRQHERNFKCYKSSYNPRFGKALKYKSNTEIILECSTACPFRTWGQNFNCVFCRVQSNDPIGLRAHMASRHANFDIQLVFSRKIRKEFLKVDITDLQCKLCFIPIDTLDDLMAHLKNDHKQPLNADVQPGVLPFKLNDGSNWKCAICKIQFSDFISLKKHTAEHYQNYVCDTCGEGFITESALKAHTKIPHDNKYTCSRCVATFTTLEERNIHIKTQHTTLPYMCVYCKEKPRFATWELRKRHLMEFHNYKPGAEMYECTTCHMTFKTRSQKYHHNVKTHRTKKETEYSFPCGSCSRAFASKLSLDKHIAKKHFHSIIIRPGPINTIARLAKSPLRPGSTKDDGPNQNEIKPKQRLFERSVGQNPQRQNAVLVLKHSTAFPFKTRFNRIVCSYCHDEFEPMAALRDHMKTAHSNADYNSAFYKVYDALKVEITDLKCTVCSQEIPNIDSFMTHISRDHKIKVNFDVPFGVLPYRQGTSGRWTCLECDKTFPKFSQINVHLRTHMKIFTCEKCGATFLSDHGLRQHERNFKCYKSSYNPRFGKALKYKSNTEIILECSTACPFRTWGQNFNCVFCRVQSNDPIGLRAHMASRHANFDIQLVFSRKIRKEFLKVDITDLQCKLCFIPIDTLDDLMAHLKNDHKQPLNADVQPGVLPFKLNDGSNWKCAICKIQFSDFISLKKHTAEHYQNYVCDTCGEGFITESALKAHTKIPHDNKYTCSRCVATFTTLEERNIHIKTQHTTLPYMCVYCKEKPRFATWELRKRHLMEFHNYKPGAEMYECTTCHMTFKTRSQKYHHNVKTHRTKKETEYSFPCGSCSRAFASKLSLDKHIAKKHFHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -