Hvir012450.1
Basic Information
- Insect
- Heliothis virescens
- Gene Symbol
- -
- Assembly
- GCA_002382865.1
- Location
- NWSH01002560.1:53791-67754[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 8.2 4.9e+02 1.3 1.8 1 14 78 91 78 94 0.87 2 28 0.0088 0.52 10.6 0.3 1 23 114 137 114 137 0.90 3 28 0.0062 0.37 11.1 1.0 1 23 144 167 144 167 0.95 4 28 3 1.8e+02 2.6 0.2 1 13 174 186 174 188 0.88 5 28 0.023 1.4 9.3 0.5 1 23 225 247 225 247 0.96 6 28 0.0091 0.55 10.6 0.0 2 23 418 440 417 440 0.94 7 28 9 5.4e+02 1.1 0.3 1 9 462 470 462 472 0.86 8 28 0.0091 0.55 10.6 0.0 2 23 574 596 573 596 0.94 9 28 0.0034 0.2 11.9 2.2 1 23 681 703 681 703 0.92 10 28 0.057 3.4 8.1 0.5 1 23 776 798 776 798 0.98 11 28 0.47 28 5.2 1.3 1 23 929 952 929 952 0.95 12 28 0.065 3.9 7.9 0.1 2 23 977 999 976 999 0.95 13 28 1.3 80 3.7 0.1 1 23 1023 1045 1023 1045 0.92 14 28 0.00016 0.0098 16.1 0.2 1 23 1049 1071 1049 1071 0.98 15 28 0.00011 0.0066 16.6 0.3 1 23 1076 1099 1076 1099 0.96 16 28 0.012 0.74 10.2 0.4 2 23 1106 1128 1106 1128 0.93 17 28 0.12 7 7.1 6.5 1 23 1135 1158 1135 1158 0.96 18 28 9.2e-05 0.0055 16.8 4.7 2 23 1165 1186 1164 1186 0.96 19 28 0.044 2.6 8.4 0.9 1 23 1340 1362 1340 1362 0.97 20 28 0.0026 0.16 12.3 0.5 2 23 1388 1409 1387 1409 0.96 21 28 0.015 0.89 9.9 0.3 1 23 1431 1453 1431 1453 0.98 22 28 3.1e-06 0.00018 21.5 0.6 1 23 1457 1479 1457 1479 0.98 23 28 0.00025 0.015 15.5 0.3 1 23 1484 1507 1484 1507 0.95 24 28 8.1e-05 0.0048 17.0 0.5 2 23 1514 1536 1514 1536 0.97 25 28 0.0001 0.0061 16.7 1.1 1 23 1543 1566 1543 1566 0.98 26 28 0.0029 0.17 12.1 2.0 2 23 1573 1594 1572 1594 0.96 27 28 5.1e-07 3.1e-05 23.9 1.0 1 23 1600 1622 1600 1622 0.99 28 28 0.081 4.9 7.6 1.5 3 23 1627 1648 1626 1648 0.96
Sequence Information
- Coding Sequence
- ATGTTCCCGGGGGCTGGTTCCGCTAACGAAGCGGAGGGGAACATAGGCGTTAGGCGAGTTAGGAAGTTGAAGGAGAACGTTAGTGCCCGACAAATGCGCAGGCGACGACGCGCCAACAACCAGCTCCCGGAAGAATCCGAGAAACGAATATCCAAAACCATGATGCGTAGAAACGCCATGATCCTTCTAGAATGTTCCACGGCCTGGGCTTTCAGATGGTTCCATAGCTCCTTCTATTGTTCCTACTGCGAGGCGAAGTTCGTTGATTGTGATGAGGTTTCGGAGACTCGAGCATCACGTATGTGTCATAGAATGAGGATACATAAGCAAGGAGTACGTTACGCCTGCCCAAGATGTCCAGAAGTCTTCACAACATACCATTCAAGAGCCAAACATTTAGTAGAAGCCCACGATCAGCAGAGAAAGGAATACTTCTGTAATGCCTGTGACAAAACTTTTGAAACTAGCTCCAAAAGGGCGGGGCATATACGCCAAACGCACGCGAAAATCGAAAAAAGACACTATTGTCCAAATTGTCCCTCCGTGTTTGTTAggtCCGTCGATCCCAAAGTTAAATGGACACCAAGACGCAAGTATAACGATAACAGGGATAATGCCGCTATCATTCTCGAATGTTCGAACGCTTGCCCCTTTCGGTGGAAGCGAGGGGCTTTCACTTGTGCCTACTGCTCTCTCTCCTTTGCAGACTTCAGTGGCGTGAGGGACCATACCTCTCAACACACCAATAGGATCGAAGCCCTCCGCTTAGCTAGGACATTTTGCAACTTCAAAATGGAAGTTACCGCGCTCCGGTGTGAACTCTGTCTCACTAACATGACGAATCTAGACACCCTTTGCGAACATTTGATCCAAAAACATGACAAACCAATCGTTACTAAGTTCGGTTTGGGAGTTATACCTTTCTATCTTACTGgAAGAAAAACTGAAGAAACACTCATTAAGAAAGAAGTGGAATCCGATACTGAGAATAAAACAATCCCATACATATCCACAACACGGGAGGGCTACCAGAAACGAGCAGTCTTCCGAAATAATATAACTATCATCATGGAAACGTGTACCGCATACCCCTTCAAGTACAGAAAAGGGACCTACCAATGTTTCTTTTGCAAAAACACCTTCTTAGAACCAGAGAAATTGAGGGAGCATAACCATGTAcaacattctgaagtcaaacaGCTCTTAAAACCGAGGAAATATGAGCCTCTCAAAATGGACTTCACGACTACTGTATGCAAGATTTGTGGCGCCACAATCAGAGATTATGCCGAATTGAAGATCCATCTGGCAGTTGAACATGCTAAAGTAATAGACTGCAGCTTCGGGGACAGTGTGCTGCCATACAAACTGAGTAAAGAGGAACATAGCTGTCAAATATGTGgAAGAAAAACTGAAGAAACACTCATTAAGAAAGAAGTGGAATCCGATACTGAGAATAAAACAATCCCATACATATCCACAACACGGGAGGGCTACCAGAAACGAGCAGTCTTCCGAAATAATATAACTATCATCATGGAAACGTGTACCGCATACCCCTTCAAGTACAGAAAAGGGACCTACCAATGTTTCTTTTGCAAAAACACCTTCTTAGAACCAGAGAAATTGAGGGAGCATAACCATGTAcaacattctgaagtcaaacaGCTCTTAAAACCGAGGAAATATGAGCCTCTCAAAATGGACTTCACGACTACTGTATGCAAGATTTGTGGCGCCACAATCAGAGATTATGCCGAATTGAAGATCCATCTGGCAGTTGAACATGCTAAAGTAATAGACTGCAGCTTCGGGGACAGTGTGCTGCCATACAAACTGAGTAAAGAGGAACATAGCTGTCAAATATGTGGTGAAGAAGTTACTGAAGAAGATTGTCTAATAGGAACTAAGGCTGATCTCAAGGCACGGATTGcagagaaaaagaaaaatttcaCAGACGACATAAAAGCTAGGACGAGACACGCTATTATACTGCTGGAATCTACAAAGATATGCCCATTCAAGTGGATGAAAAACCTGTATATTTGTTTCTATTGCCATCAAAAATTCTCCGACCCCGCTAAATTGAGAGACCATAATACTGAACACGGGTTTCTGACAACATTCCAAATAAAACACGCCTTATCTAAGCTTAAAAAGTACGAATTAGTCAAGGTAGATATCACCGATGTTGGCTGCAAGCTCTGCGATGATCTAATCCCGGATTTTCCAACTCTAAAATGGCATTTACTTGAAAAGCATAGCAAGAATTTGGACCCTAAATCAGGGGATGGCGTCCTTCCCTTCAAAATTACTTTAGACAACTACCAATGCGCGCTTTGTATAGAAAAGTACTCAGAATTCAAGTCTCTAAACCAGCATATGAACGTACATTTCCAGAATTTCATTTGCGAGCAATGCGGTACAGGATCCGACACTTCAAACTCCGAAACGAAGCGAAGAGTCGTCCCGTTGTTCCAAGTATCTTACGACAGGAGTTTGTGTAGACCCCTTGGAACGTTAATAGACTTCAATACATTTAGGAAAAATAGATTAAAAACTTTCTCAGCGCCTCCAGCCAGAGATCTTTCTCCACCAGCAAGAGATATTTCTGTATCACGCAGTCCTTCTCCCGTTTACTTAAATACTCCATCGCCTTATGTCGAAAGTACCGCATCCGTCCAAGCTGTGAAAACGAAAGAAAAAACTCCAGACATACGACAGAATGCTTTAGCAGTATTTGAATTCTCAACGGTCTACCCATTTGTTTACGGCAGCAACAAATTCAAATGTTTCGTCTGCTCTCAACCATTTTTGGATATCAACGAGTTAAAATTACATATGCACTTAACACATAACTTCGCTCCACTTAAAAGACTAGTGAATAACAGAAGAGAAAATGTCTTAAAAGTAGATGTCAGTAATATAACGTGTAAGATTTGTTCGGGAAAGCTGGCTAATCTTGTTGAATTGAAGCGACATCTTAAAGAAATTCATGGCAAGCCCATTGATTTGGAAGTGCAGGATAATATGATACCGTTCAACCTCGAACCGGTTGATGATGGCTACAAATGTGTTGTTTGCGAACAAATCTTCATCAAAGTGAGGATTTTAGTCATACACATGAGCGAGCATTTTAACAACTACAGCTGTGAGATCTGTGGTTCAGTTTTCATGACATTACGGCTTTTGAAGAAACATTTAGAGGTCCACGATTCCGGCAACTTTCCCTGCGATCGTTGCGACAAAGTATTTAGCACTCCCTACAAGCGAACTTTACATATCCGTGGGGTTCATTTAAAACAGTGTCCTAGACGATGTCCGATGTGCCCGGAGAAGTTCAACTCGAATTATAAGCGGACAATTCACTTGCAAGACGTCCATAATCAGGAGACTAGGGTTCATAAATGCAAGACCTGTGGTCGTGGCTTTAATTTGAAGTACCATCTGGTTTGTCATGTGCGGTCCGTTCATCTCCAAGAGAGGAACCAACAGTGCGATGTGTGCCATCAGAGGTTTTGCAATAAGGAGTCTTTGAAACGACATATGGTTATACACACTGGTGAGAAAAATCACAAATGTGATGTCTGTGGGATCATCCAGAAATCAGATTCGACAATCACTCTCAAAGCCGAAGACGGGACAGATATTAAACTGACGCTTCTAAAATATCCAATAGCCTTAGACTCTTTAGAATGCGAGCAAGATAATtctatcaacaaaaaaataaccaacaaaGTAACAAAGAAATTCAACAAGGTTCAGCTAAAGAAGGATAAAGctgaaataacaaacatgtcCATATTGAAAGAACCAGTTTCTATGAACGATATAGATTGGAAGAACAATGACGATCTAGAAAGTTCTGTGACGATTAATGTGAAGACTGTGCAAAGATGTCTCTATGGAACCACGAGGAAACGAACTAAAAGCATTGAATATCAATCCTGGAAGCAAAATGCTTTAATAATCTTTGAATATTCGTTTGTGTACCCTTTTATTCACGCAAGTAACAAATACAAATGCTTTATATGCGCCAAACCGTTTCTAGATGCACATCTGTTAAAAGACCATACAAATGATCATACTATCAAAGAAATGAAGAGAGAACTAAGCAATAGGGTCAGAGATAAGAATCTCAAAGTTGACGTTACATATCTACAATGTAAGATCTGTTTACAGTCGCTGACAAATCTGCAGAATTTGAAAATACATTTGAAGGAACACGGCAAGAAAATTGAACCGGATTTGCAAGATAATATAATACCATTCAAGTTAGGAAGCGACATTTTCGAATGCCAAATTTGTGGGGAGAAGTACCTAAAACTAAGACTCCTTATTATCCATATGAGCAAACATTATAATAACTACAGTTGCGAAATATGTGGGACTGTATTCATATCGCTACATCTATTGAAACGCCACCTCCAAATCCACGAATCAGGGAGCTTTCCTTGCGACAAATGTGACAAGGTCTTCAGTAACGCCGCCAAGAGGACTCTTCATTATCGAGGAGTCCATCTTAAGCAGTTTCCAAGGCGCTGTCCTATATGCCCCGAAAGGTTCAACTCAAACTACCAGAGGACCAAACATTTACGTATAATACATAACCAGACGACAGGATTGTATAGATGTGATACTTGTGGACGGGAATATGACTTGAAATACCACCTTCTCATCCACATAAGGTCTGTGCATCTTCAAGAGAGGAATCAAGAATGTCCTGTGTGCAATTCGAGGTTTTTTTCGAAGTATTGTCTTTCGAGGCATATGGTCATCCATACAGGAGAGAAGAATTTTAAATGTGAGATTTGTGGCAAAGCTTATGCTAGAAGGAAAAATCTTCGAGAACATTCGAGGACGCATGAAGTGGGGTTATGTTCTATTTGTGGCCAGAACTGTGGGGATCATAATAATCTTGTTAGTCATGTTAATAACATTCATAGCGTGATGTGA
- Protein Sequence
- MFPGAGSANEAEGNIGVRRVRKLKENVSARQMRRRRRANNQLPEESEKRISKTMMRRNAMILLECSTAWAFRWFHSSFYCSYCEAKFVDCDEVSETRASRMCHRMRIHKQGVRYACPRCPEVFTTYHSRAKHLVEAHDQQRKEYFCNACDKTFETSSKRAGHIRQTHAKIEKRHYCPNCPSVFVRSVDPKVKWTPRRKYNDNRDNAAIILECSNACPFRWKRGAFTCAYCSLSFADFSGVRDHTSQHTNRIEALRLARTFCNFKMEVTALRCELCLTNMTNLDTLCEHLIQKHDKPIVTKFGLGVIPFYLTGRKTEETLIKKEVESDTENKTIPYISTTREGYQKRAVFRNNITIIMETCTAYPFKYRKGTYQCFFCKNTFLEPEKLREHNHVQHSEVKQLLKPRKYEPLKMDFTTTVCKICGATIRDYAELKIHLAVEHAKVIDCSFGDSVLPYKLSKEEHSCQICGRKTEETLIKKEVESDTENKTIPYISTTREGYQKRAVFRNNITIIMETCTAYPFKYRKGTYQCFFCKNTFLEPEKLREHNHVQHSEVKQLLKPRKYEPLKMDFTTTVCKICGATIRDYAELKIHLAVEHAKVIDCSFGDSVLPYKLSKEEHSCQICGEEVTEEDCLIGTKADLKARIAEKKKNFTDDIKARTRHAIILLESTKICPFKWMKNLYICFYCHQKFSDPAKLRDHNTEHGFLTTFQIKHALSKLKKYELVKVDITDVGCKLCDDLIPDFPTLKWHLLEKHSKNLDPKSGDGVLPFKITLDNYQCALCIEKYSEFKSLNQHMNVHFQNFICEQCGTGSDTSNSETKRRVVPLFQVSYDRSLCRPLGTLIDFNTFRKNRLKTFSAPPARDLSPPARDISVSRSPSPVYLNTPSPYVESTASVQAVKTKEKTPDIRQNALAVFEFSTVYPFVYGSNKFKCFVCSQPFLDINELKLHMHLTHNFAPLKRLVNNRRENVLKVDVSNITCKICSGKLANLVELKRHLKEIHGKPIDLEVQDNMIPFNLEPVDDGYKCVVCEQIFIKVRILVIHMSEHFNNYSCEICGSVFMTLRLLKKHLEVHDSGNFPCDRCDKVFSTPYKRTLHIRGVHLKQCPRRCPMCPEKFNSNYKRTIHLQDVHNQETRVHKCKTCGRGFNLKYHLVCHVRSVHLQERNQQCDVCHQRFCNKESLKRHMVIHTGEKNHKCDVCGIIQKSDSTITLKAEDGTDIKLTLLKYPIALDSLECEQDNSINKKITNKVTKKFNKVQLKKDKAEITNMSILKEPVSMNDIDWKNNDDLESSVTINVKTVQRCLYGTTRKRTKSIEYQSWKQNALIIFEYSFVYPFIHASNKYKCFICAKPFLDAHLLKDHTNDHTIKEMKRELSNRVRDKNLKVDVTYLQCKICLQSLTNLQNLKIHLKEHGKKIEPDLQDNIIPFKLGSDIFECQICGEKYLKLRLLIIHMSKHYNNYSCEICGTVFISLHLLKRHLQIHESGSFPCDKCDKVFSNAAKRTLHYRGVHLKQFPRRCPICPERFNSNYQRTKHLRIIHNQTTGLYRCDTCGREYDLKYHLLIHIRSVHLQERNQECPVCNSRFFSKYCLSRHMVIHTGEKNFKCEICGKAYARRKNLREHSRTHEVGLCSICGQNCGDHNNLVSHVNNIHSVM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -