Basic Information

Insect: Heliothis virescens
Gene Symbol: -
Assembly: GCA_002382865.1
Location: NWSH01000173.1:115033-123256[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0017 0.1 12.8 5.6 1 23 234 257 234 257 0.98

2 12 0.0025 0.15 12.3 1.0 1 23 264 286 264 286 0.94

3 12 8.5e-05 0.0051 17.0 1.5 2 23 294 315 293 315 0.96

4 12 9.9e-06 0.00059 19.9 1.1 1 23 321 343 321 343 0.96

5 12 3e-06 0.00018 21.5 3.1 1 23 352 374 352 374 0.98

6 12 2.7e-06 0.00016 21.7 0.3 1 23 380 402 380 402 0.98

7 12 0.00045 0.027 14.7 7.5 1 23 408 430 408 430 0.98

8 12 1.5e-06 8.7e-05 22.5 1.7 1 23 436 458 436 458 0.99

9 12 6.6e-06 0.00039 20.5 0.8 1 23 464 486 464 486 0.98

10 12 9.3e-07 5.6e-05 23.1 0.9 1 23 492 513 492 513 0.98

11 12 4.7e-05 0.0028 17.8 2.2 1 23 519 541 519 541 0.99

12 12 0.0001 0.006 16.7 3.4 1 23 547 569 547 569 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0017	0.1	12.8	5.6	1	23	234	257	234	257	0.98
2	12	0.0025	0.15	12.3	1.0	1	23	264	286	264	286	0.94
3	12	8.5e-05	0.0051	17.0	1.5	2	23	294	315	293	315	0.96
4	12	9.9e-06	0.00059	19.9	1.1	1	23	321	343	321	343	0.96
5	12	3e-06	0.00018	21.5	3.1	1	23	352	374	352	374	0.98
6	12	2.7e-06	0.00016	21.7	0.3	1	23	380	402	380	402	0.98
7	12	0.00045	0.027	14.7	7.5	1	23	408	430	408	430	0.98
8	12	1.5e-06	8.7e-05	22.5	1.7	1	23	436	458	436	458	0.99
9	12	6.6e-06	0.00039	20.5	0.8	1	23	464	486	464	486	0.98
10	12	9.3e-07	5.6e-05	23.1	0.9	1	23	492	513	492	513	0.98
11	12	4.7e-05	0.0028	17.8	2.2	1	23	519	541	519	541	0.99
12	12	0.0001	0.006	16.7	3.4	1	23	547	569	547	569	0.97

Sequence Information

Coding Sequence: ATGGAAACGGAAAGCGCCCTGGAAGATTTCGGGAAAAAAAACGATGATGAAGGGGTATCCAAGGAAGATTACATTGAGATAGAGATACCATACGATTTTTACCAATATCTTAGTTCAGAGCAGTGCAACATACAGAACATGTGTCGAATATGTCTAGCTACAGACAACGACGTGTTGTACCCTTTAGTTGCTACCAAAGAGAACAATATTCTAGCTCAAATGTTTACAGCATTGACTTCACTACAATTGTTCCCAGGAGATGGTCTACCATCAAGCATCTGTGAGCAGTGTCAAGCTCAAGTGATGCACTGCTATGAGTTCAAGCTCAAGTGCGAGAAGTCTGACTGCATGCTCAAGTCCATACTCAAAGGAGAATTCATTGCCAAAGAGGAACTGACCGATCATAGCATGGCTTTTAAACAAgaagataaagaaaatattatggatagaaatgaaattaataacataggattagatgataatttattttcacatgATAACATTGAAGTTAAACAAGAATCAGAACTATTGGAagAAGTGCAATATTTAGAAGATCTCAGTGACAACAGTGATAACCTGACTATAGTACAAAATACCAGAACTAAGAAAagaaaaaaagtaaaatctgATGTGGATGGTGATTACAAAATCCACAGAAATATTTCAGtgagaaataaatataacaataaaggTAACTCATTTCGATGCAAGCTTTGTCCCAAGGTATTCCATAATTTGAAAACATTCCACGCTCACGTTAGGAGCAAGCATCCAAGTAGCAAACACCAGCATATGTGCAACCAATGCACTGAATCTTTTGAGTCCGAACACGATCTTATAGTACATTCAGCTATTCATGTTACGCATGGAAACATTTGGAAGTGCAACCAGTGTCCTAAGGAATTTAGCACGCGCACAATGATCCGCCGCCACATCTTCCGCCACATGGAGTCGAAGCGTCACTCGTGCGTGGCGTGCGGCAAGTCGTTCACGGAGCTGTACGCGCTGCGCCGCCACCAGCGCGTGCACACCGGCGAACTGGTGGAGAAGAAGCACAAGTGCACTATGTGCGATAAACGGTACAGTAACAGCAGTCTACTAGCGTCTCACATGTCGCGGCACATAGGGCTCCGCCCCTTCGAGTGCGGCGTGTGCGGGAAGCGCTTTACCACCAACCGACTGCTGGCTTCCCACCGACTCGTGCATTCTGAAAGCAAGCCGTATGCCTGCCAGTATTGTGATAAACGTTTCCGTCACGAGTCGACGCGCAACACGCACCACCGCACGCACACGGGCGAGAAGCCCTACGTCTGCGCCGTCTGCGGCAAGAGCTTCATACAGAACTCCAACCACACCCAGCACATGCGGACACATACTGGTGAACGCCCATATTCGTGTTCGGTATGCGACCGCAAGTTCTCATCGGGGTCTTCACTCAAGAGCCACGAACGAATACATTCTGGAGAAAGACCTTACAGCTGTGATGTTTGCGGGAAAAGGTTCACCCGTAAGAACTTGATAGCGCACATGCGACAGCACACGGGCGAGCGGCCGTACGAGTGCAGCCTGTGCAACAAGAAGTTCCCCAACGCCACGCGACTCCGGGATCATCACAGAGTGCATACCGGTGAAAAACCATTTGAATGCACAGTGTGCCCTCAAAAATTTGCAACGAAATCACAACTGTTGAAACATTGTAAAACACACCAAAAGAAGAAGAGGAAACCAGAAAACCGTAGTCTAGTCATATTACAACACGTTGAACCAGTGCCCGTTGTCACTGATACACTAATATTCAACAAGGACCATGGAGAACTAATTACAGTCAGTGAAAATACTGAGGACAAGGCACTTGAAAATACAACCAAAGAACTGACTTTGAACATGGTGCAAGAAATGCCATTGGAAGTCACAGAAGAATTGGTCCTACAAGACGATAGTCATATGAAAGGAAACTTATTAGTTGTCGATAGTAGCCCAAACAACTACGAAGCTGGTAACATTTGCTTGAACACAGGCAATGTCAATATTATTGATGACGTCAACTACGACGGTGAAAATCTGGTAACACTGAATGAGGGCGGAGTCAGTATTTCGACGGCTAACCTCGAAGGTACTACAGTGAAACTGTACCAATTAGACCAAAGCTTAGTACAAATACATAGTTCAGGTGGGCAAGTCACTATTAGCAAGATAAGTAGCAAAATGACTGccaacttttaa
Protein Sequence: METESALEDFGKKNDDEGVSKEDYIEIEIPYDFYQYLSSEQCNIQNMCRICLATDNDVLYPLVATKENNILAQMFTALTSLQLFPGDGLPSSICEQCQAQVMHCYEFKLKCEKSDCMLKSILKGEFIAKEELTDHSMAFKQEDKENIMDRNEINNIGLDDNLFSHDNIEVKQESELLEEVQYLEDLSDNSDNLTIVQNTRTKKRKKVKSDVDGDYKIHRNISVRNKYNNKGNSFRCKLCPKVFHNLKTFHAHVRSKHPSSKHQHMCNQCTESFESEHDLIVHSAIHVTHGNIWKCNQCPKEFSTRTMIRRHIFRHMESKRHSCVACGKSFTELYALRRHQRVHTGELVEKKHKCTMCDKRYSNSSLLASHMSRHIGLRPFECGVCGKRFTTNRLLASHRLVHSESKPYACQYCDKRFRHESTRNTHHRTHTGEKPYVCAVCGKSFIQNSNHTQHMRTHTGERPYSCSVCDRKFSSGSSLKSHERIHSGERPYSCDVCGKRFTRKNLIAHMRQHTGERPYECSLCNKKFPNATRLRDHHRVHTGEKPFECTVCPQKFATKSQLLKHCKTHQKKKRKPENRSLVILQHVEPVPVVTDTLIFNKDHGELITVSENTEDKALENTTKELTLNMVQEMPLEVTEELVLQDDSHMKGNLLVVDSSPNNYEAGNICLNTGNVNIIDDVNYDGENLVTLNEGGVSISTANLEGTTVKLYQLDQSLVQIHSSGGQVTISKISSKMTANF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00785395;
90% Identity: iTF_00783739;
80% Identity: -