Hvir009519.1
Basic Information
- Insect
- Heliothis virescens
- Gene Symbol
- Zfa
- Assembly
- GCA_002382865.1
- Location
- NWSH01004133.1:13710-17461[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.082 4.9 7.6 0.3 1 22 105 126 105 126 0.95 2 21 4.3 2.6e+02 2.1 0.4 1 21 168 188 168 191 0.78 3 21 0.0065 0.39 11.0 4.8 2 22 201 221 200 221 0.93 4 21 3.6 2.1e+02 2.4 0.0 3 23 230 251 228 251 0.89 5 21 0.0069 0.41 10.9 0.2 3 23 272 293 270 293 0.96 6 21 0.0015 0.088 13.1 3.5 1 23 299 322 299 322 0.95 7 21 0.049 3 8.3 0.0 1 23 348 371 348 371 0.90 8 21 0.0034 0.2 11.9 0.2 1 23 441 464 441 464 0.95 9 21 0.00091 0.055 13.7 1.3 1 23 475 497 475 497 0.97 10 21 7e-05 0.0042 17.2 1.8 1 23 547 570 547 570 0.97 11 21 0.0019 0.11 12.7 1.7 1 23 630 653 630 653 0.96 12 21 0.00054 0.032 14.4 1.5 2 23 680 702 680 702 0.97 13 21 0.016 0.93 9.8 0.1 2 23 708 730 707 730 0.94 14 21 0.0038 0.23 11.8 0.2 1 21 774 794 774 795 0.95 15 21 0.00016 0.0099 16.0 1.0 1 23 805 827 805 827 0.93 16 21 4.4e-05 0.0026 17.9 0.3 2 23 920 942 920 942 0.93 17 21 1.6e-07 9.3e-06 25.6 1.4 3 23 949 969 948 969 0.98 18 21 0.012 0.7 10.2 0.4 1 23 987 1009 987 1010 0.95 19 21 0.073 4.3 7.7 0.0 1 23 1033 1055 1033 1055 0.97 20 21 0.011 0.65 10.3 0.6 1 23 1061 1084 1061 1084 0.95 21 21 0.0001 0.0062 16.7 0.4 1 23 1092 1115 1092 1115 0.96
Sequence Information
- Coding Sequence
- ATGACATTGGCACCAGTCGTCGAAATAAGCGAGGGTTTGCAAACTAATTCATTTAACAGCGAAGTTAATGAAGATGACGAGGAACTGGATGAAACTGCGGATCCTAATGATACCATCGACGATGAGGAACAGGTGAAAGAACTTGACCCTGACAAAACTTATGTTACTAAAACCCAAAGAGATTTCATCCAAAAATATCGAGACATCATCCAACAAATTAACACAAAGCGTTGTTTGTGCTGTGATCGGGAGCATCCCCGCAGAAAAGCTGTTATACAGCATTTGCAGAAAAACGGACACAAAGTACCAAAACATACTTGTTACAACTGTGTAATCACATTCGGCCACATTGGCGCTTTACTCAGTCATATGAGGTCAAATTCTTGTACCAATTTGTGGAAAATTATTTACAACGAAAACGGCATTACTGATGATTTAGTTCTCGAAGATGAACCCAAAGAGGTCAAGGTTCAATACAAAGATATTTTCAATGCCAGGTCGTACGCGTGCAAGCTCTGCCCTGCTAAGTTCCAACTAAAACAGTTCATCTTGAAGCATGTTTTGGATACACATGAGGACGGACAGTCGAGAGTGCCCCTCTGTTGTGTTCACTGCCGATCGAGATTCAAAGATAAAAGTTTACTCAAAAAACACATTCGTAAAGGTGAATGTACTATTTATATAGCCTGCGATTTGTGTGCAGAAAGGTTCGGCAATATGCAAGACTTCAATGATCACGCGTTAGCCATCCACGCTGGCAGTTTCGATCAGTCGGATAATCAAAGCAAATGTGTCGACGGTCGCCCAACTGACTGTCCATTATGTGGAAAGAAAAACAGCAGCTATCCGAATTTAGTGAAACATTTGAAGATTATACATAATGAGGAGAAACCTCATTACTGTCAGCACTGCGATTCTAAATTCGAACAAGCTACTGATCTGAACAAGCACATTTACATGGAGCATTCTGACAGAGCGCTAGGCATGACCAGCACCGAGCCTGATATGTCCATAGTGAAGGAGGAAGCTGAGGAGTATCATTACTCGTGTACGGAATGTAATGCTATATTCGAAACTGTTGACGCGTGGACTGACCATCAGGTCGCGGAACATAACCAAGTGGCCCACCACTGTGACCAGTCGTATGCCCCAACTCTTACAGCACTCCACAAAAACTGTCCGAGCATGTGCAGCAGACACATGCGGGGGTTGGCGCAGTCGCCGAATCTGAATTCTTCTGCGACATTTGCATCAGATCATTCAAAAGTCGNACCTTCGGAGCTCGCAGAGCATAAGAATACCCATCTGAGGGTTAAATTCTATCCTTGCAGCGTATGCCCTAACTCTTACAGCACTCCACAAAAACTGTCCGAGCATGTGCAGCAGACACATGCGGGGGTTGGCGCAGTCGCCGAATCTGAATTCTTCTGCGACATTTGCATCAGATCATTCAAAAGTCGTCAGGCATATTCAAATCATATGCGTATTCATGCTAAAATACCAACCACAAACAGGAAACCTGGCGTCATTAAAGGTGGGTTTGCGCCACAAATAATTGGAAAACCCATCAAACAATACCCTGTTGTTCAACCTGGGTTTGTATCATTTAAACCTAATTACAATATCCCTAATGCTCCTTACTCATGTGACATTTGCGGCAAAGGATTCATGCACAAGAAGAATATATGGAAACATAAGAAAGTGTTGCATGCAGACATTTTAGCTGATAGACACGATAGTGAAGAGAACACTATGCAAGCCTCGACTGAAGAGGAAGAATTCAATCCTGAAGAGAACGGTGCGGCTCTCTCAACGCCgcaatttaatagttttaacttCTCAAATTTCCCGAACAATGTACAACAAGCGACACCAGAAACAATGCCTTACTCGTGTGAATTGTGTTTTAAACGGTTCCCACTCAGGACTAGTTTGTGGAAACACAAGCGCGCTAAACACGGAATTGTAAACCCTAGCACAAGTGGTAGCAACGATGCATCCACAGCATCGGCTAGTGGAGACCATAGTAGTAGGGCTAGTTGCACGATATGTAGGATCACGTTTGCAGACAAAAAATCTTACTACCGTCACCGAAAGACTGTCCACAAATCCACCGTTCAAATGTGTAAAATATGTGGTAAACCTTTAAGTTCAACCTTGGAATTGTACGAGCATTTGAAGGCTGCACACGCAAGGGAATTACTGGGTTATAACGCCAACCAAGGTTCAAGTAAATCTCAAGACATGACACAAGAGATGGAACCTGATTATGAAAATGACCAGGATTCGGCCGATCCCAGCGTTGATTATCAAGCGAGATACCCCTGCGACACATGTGGTAAGCAGTTTGTCGGTTTACTCGCTTTGCAAAACCACCAGTGCGTCAATCAGATGCCAGCACAACCACAGACGTTCGACTGCGAGATTTGTCATAAAAGTTACACTTCAATATCAGCACTGAAAAGCCATCGCGGTTGGCATTTACGTTCACCCGATGGAAAAGCAGCTGCTAATAACTCTGGGCTTTGGATGCCTCAGCACAAAGTTACTAGCAAGATAAGCAAACATGAAGTCGTGGACCCGTCGCAACTTGCTAAGGTAACGCATACTCCGGGCCCTCCACCTGTCACCGCCACTGCAGCAAAAAGAAGACTGCCACCGGAGGTCGAAGTAACCGTTGTTAATccaaacaaaaaattacgatCAGACGATTCCGTCGATATGGATATGCAAAATGCAGGTTCTATGGAGGATAGATACTGTACGATTTGCGACAAGGAGTTTACGAAACGAGCGGCCTATCAACGCCACATGGACGAAGTACACCAACCGAACTCCGTGTTTTGCCCGGTCTGTGATAAGAGTTTTACTAGAAAGTCAACATTGCTCATTCACATGAAGAAACATTATGAGAGTGGCGAGGGTAGCTCCTCTGCTACAGGTCAGGGGGACGATGACTTCTCCTGTGATTTGTGCGGCGCGCAGTATGACAATGATCAGGCACTGAGGGCGCATCGAGCGAGGCATCACGGAGAAGAGGAAGAATCAGCGGAAGAGAGTGATGACGGTAACGTTCCTGCAGCTCCCCCTGGTGAATTCACGTGTGCACAATGCGGCGATGGTGTCGCTACCCCTCGAGACCTCATTGCCCACCGCACGATGCATGCTACTCCCACCAAATTCTTCTGTAACATATGCAAAGTGTACTTCGCTCGGGCACTCGACCTCTCTTCGCACACTCGGGCGCGACACGCAGACAACGAAAAAGTATTCTTCCCGTGTGCCATGTGCGACAGATTTTACATGAACAAGAAGAGCTTACAGCGACACATTGAGATGGTTCACTGA
- Protein Sequence
- MTLAPVVEISEGLQTNSFNSEVNEDDEELDETADPNDTIDDEEQVKELDPDKTYVTKTQRDFIQKYRDIIQQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVITFGHIGALLSHMRSNSCTNLWKIIYNENGITDDLVLEDEPKEVKVQYKDIFNARSYACKLCPAKFQLKQFILKHVLDTHEDGQSRVPLCCVHCRSRFKDKSLLKKHIRKGECTIYIACDLCAERFGNMQDFNDHALAIHAGSFDQSDNQSKCVDGRPTDCPLCGKKNSSYPNLVKHLKIIHNEEKPHYCQHCDSKFEQATDLNKHIYMEHSDRALGMTSTEPDMSIVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQSYAPTLTALHKNCPSMCSRHMRGLAQSPNLNSSATFASDHSKVXPSELAEHKNTHLRVKFYPCSVCPNSYSTPQKLSEHVQQTHAGVGAVAESEFFCDICIRSFKSRQAYSNHMRIHAKIPTTNRKPGVIKGGFAPQIIGKPIKQYPVVQPGFVSFKPNYNIPNAPYSCDICGKGFMHKKNIWKHKKVLHADILADRHDSEENTMQASTEEEEFNPEENGAALSTPQFNSFNFSNFPNNVQQATPETMPYSCELCFKRFPLRTSLWKHKRAKHGIVNPSTSGSNDASTASASGDHSSRASCTICRITFADKKSYYRHRKTVHKSTVQMCKICGKPLSSTLELYEHLKAAHARELLGYNANQGSSKSQDMTQEMEPDYENDQDSADPSVDYQARYPCDTCGKQFVGLLALQNHQCVNQMPAQPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKISKHEVVDPSQLAKVTHTPGPPPVTATAAKRRLPPEVEVTVVNPNKKLRSDDSVDMDMQNAGSMEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLIHMKKHYESGEGSSSATGQGDDDFSCDLCGAQYDNDQALRAHRARHHGEEEESAEESDDGNVPAAPPGEFTCAQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -