Basic Information

Insect: Heliothis virescens
Gene Symbol: -
Assembly: GCA_002382865.1
Location: NWSH01000022.1:2924-5565[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00022 0.013 15.7 4.0 1 23 116 138 116 138 0.98

2 12 6.8e-06 0.00041 20.4 4.2 2 23 143 164 142 164 0.96

3 12 0.00031 0.019 15.2 0.7 1 23 184 206 184 206 0.98

4 12 0.00027 0.016 15.4 4.2 2 20 214 232 213 235 0.93

5 12 9.7e-07 5.8e-05 23.1 0.2 1 23 241 263 241 263 0.99

6 12 7.7e-06 0.00046 20.2 5.3 1 23 269 291 269 291 0.97

7 12 1.1e-06 6.3e-05 22.9 0.8 1 23 297 319 297 319 0.96

8 12 2.5e-05 0.0015 18.6 0.2 1 23 325 347 325 347 0.97

9 12 0.00017 0.01 16.0 4.0 1 23 353 375 353 375 0.98

10 12 1.4e-05 0.00084 19.4 3.4 1 23 381 403 381 403 0.98

11 12 9.9e-08 5.9e-06 26.2 1.3 1 23 409 431 409 431 0.99

12 12 1.4e-05 0.00082 19.4 1.4 1 23 437 459 437 459 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00022	0.013	15.7	4.0	1	23	116	138	116	138	0.98
2	12	6.8e-06	0.00041	20.4	4.2	2	23	143	164	142	164	0.96
3	12	0.00031	0.019	15.2	0.7	1	23	184	206	184	206	0.98
4	12	0.00027	0.016	15.4	4.2	2	20	214	232	213	235	0.93
5	12	9.7e-07	5.8e-05	23.1	0.2	1	23	241	263	241	263	0.99
6	12	7.7e-06	0.00046	20.2	5.3	1	23	269	291	269	291	0.97
7	12	1.1e-06	6.3e-05	22.9	0.8	1	23	297	319	297	319	0.96
8	12	2.5e-05	0.0015	18.6	0.2	1	23	325	347	325	347	0.97
9	12	0.00017	0.01	16.0	4.0	1	23	353	375	353	375	0.98
10	12	1.4e-05	0.00084	19.4	3.4	1	23	381	403	381	403	0.98
11	12	9.9e-08	5.9e-06	26.2	1.3	1	23	409	431	409	431	0.99
12	12	1.4e-05	0.00082	19.4	1.4	1	23	437	459	437	459	0.97

Sequence Information

Coding Sequence: ATGGAGGACCCACTACCAAAGAAACTGTGTAATTCTTGTTACAATACTTTATTAAATTTCAATGCATTCAAGACTACAGCTCTACAAGCCGATGCTCAGTTGCGCgaacattttactaaaatacaaaataaaagagaagaggAGGAAAGcacagatattaaaataaaacaggaaCATGAATACAATCAGTATCAAATACAAATTCAAATTTGCGAAGACAGTATTGACTCCGATATGGCAGCTAAACAAGAATTAAATCCTTTCAATGAACCACCTATGTATTCAGATATATCCGATGCTAGCCAACTAGAAGAGTGTCAAATAAAACGCCAAAAGGCACCAATATTCAAATGTAACACTTGTAGTAAAGAGTATAAATCACAAAAGAAACTACAAATACATAAACTCAAACATGCGTACAATTGCACATGCAATATTTGTGGCAAAtcttttaaatacaattataagTATGTGAAACATTTGCTTACTCATGGACAAGCTACTGAAAAATCTTATAAAGATGAACTAAATCATAATGCAGATGAGATGTTCCGGTGCGATGTTTGTCCAGCTTATTTTAAGACCATAAACTCACTTTCCGCTCATAAAAGGAAACACACTTCAAAAGACCGAGTACTGTCATGTTCTATATGCAACAaggtgtttaaaaaaatatctcatttaAAACGTCATGAGCTATGTCATGAAAACAATCGCCCTTTCAAATGTTCTCTATGCCCCAAGACTTTTGCAACGGAAGCTAATTTAGCGGATCACTTAAATAAACACAATGGTATTAAACCTCATTGCTGTCCTATATGTACTAAATCCTTTGCCCATCTGTCAACATTAACAAATCATATAAAGATTCACACAAGAGAAAAGCCTTACTTATGTCCTACTTGTGGAAAAAGGTTTGATGCCAGTACTAATTTGAACCAGCATATGAAAAGGCATCTTGGATTGAAGACCTATGCTTGTAATTTGTGTCCTAGGAAGTTCATAAGTAAAGGTGAATTGAAGTCCCACGGTATAACCCACACCGGAGTGCAGTCTTATTCCTGTGATCAATGCAACTCCAAATTCACGAAGCGGAGCTCTTTGACCAAACACAAGTTGAGGCATATGGATATCAAACCTTATCAGTGTGATGCTTGTCCTATGAAgtttaCAAGCAAATACCATTTGAAAAGGCATAATAGAATTCACACAGGTGAACGTCCTTATCGTTGCGAAATATGTGATCGTACATTCACACAGAGCAATGATTTGGTCAAGCATACTCGCTCACATTTGGGAAATGCTATGTATAAATGCAACGAATGTTCTCAAAGCTTCAGACTTAAAACTGAACTTCGCCAGCATATATCGGAACATTTCATCTCTTCTCAACTGCAGGCGTTAAAAATGACTTCAGAAATACCTAAAGCCTCTACAGAAAAAAATGATTGTGTAGTAAAGATGCTAGTAATGAATAAAGAGCTTGAGAGCACTAGTCTTCGTCTAGAAGAAGATAAAATAGTGAATTGa
Protein Sequence: MEDPLPKKLCNSCYNTLLNFNAFKTTALQADAQLREHFTKIQNKREEEESTDIKIKQEHEYNQYQIQIQICEDSIDSDMAAKQELNPFNEPPMYSDISDASQLEECQIKRQKAPIFKCNTCSKEYKSQKKLQIHKLKHAYNCTCNICGKSFKYNYKYVKHLLTHGQATEKSYKDELNHNADEMFRCDVCPAYFKTINSLSAHKRKHTSKDRVLSCSICNKVFKKISHLKRHELCHENNRPFKCSLCPKTFATEANLADHLNKHNGIKPHCCPICTKSFAHLSTLTNHIKIHTREKPYLCPTCGKRFDASTNLNQHMKRHLGLKTYACNLCPRKFISKGELKSHGITHTGVQSYSCDQCNSKFTKRSSLTKHKLRHMDIKPYQCDACPMKFTSKYHLKRHNRIHTGERPYRCEICDRTFTQSNDLVKHTRSHLGNAMYKCNECSQSFRLKTELRQHISEHFISSQLQALKMTSEIPKASTEKNDCVVKMLVMNKELESTSLRLEEDKIVN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00784590;
90% Identity: -
80% Identity: -