Hvir013964.1
Basic Information
- Insect
- Heliothis virescens
- Gene Symbol
- -
- Assembly
- GCA_002382865.1
- Location
- NWSH01000101.1:117468-123543[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.061 3.7 8.0 1.8 1 23 25 47 25 47 0.96 2 27 0.063 3.7 7.9 0.0 2 23 76 98 75 98 0.93 3 27 0.84 50 4.4 0.1 6 23 123 141 123 141 0.95 4 27 0.00034 0.02 15.1 2.6 2 23 147 169 146 169 0.95 5 27 0.0017 0.1 12.9 1.1 1 23 174 197 174 197 0.96 6 27 0.31 19 5.7 0.5 2 23 200 222 199 222 0.93 7 27 0.1 6.1 7.3 1.5 2 21 229 248 228 249 0.93 8 27 0.0032 0.19 12.0 0.6 1 23 309 332 309 332 0.93 9 27 0.017 1 9.7 1.7 1 23 397 419 397 419 0.97 10 27 0.24 14 6.1 0.1 2 23 447 469 446 469 0.93 11 27 6.4e-05 0.0038 17.3 1.9 2 23 490 512 489 512 0.96 12 27 8.1e-05 0.0049 17.0 1.2 1 23 517 540 517 540 0.96 13 27 0.00011 0.0064 16.6 2.1 1 23 544 567 544 567 0.95 14 27 0.31 18 5.8 1.2 2 23 570 592 569 592 0.95 15 27 0.95 57 4.2 1.8 2 22 598 618 597 621 0.89 16 27 0.0011 0.064 13.5 2.9 1 23 665 688 665 688 0.96 17 27 0.00025 0.015 15.5 0.1 2 23 710 732 709 732 0.95 18 27 0.0069 0.41 11.0 0.7 2 21 740 759 739 760 0.94 19 27 0.0034 0.2 11.9 1.8 1 23 813 836 813 836 0.93 20 27 0.58 35 4.9 0.0 3 23 865 886 863 886 0.92 21 27 1.2 74 3.8 0.0 2 23 909 932 908 932 0.92 22 27 1.2e-05 0.00071 19.6 0.1 3 23 939 960 938 960 0.94 23 27 0.0037 0.22 11.8 2.6 2 23 965 987 964 987 0.94 24 27 0.0019 0.11 12.7 4.7 1 23 992 1015 992 1015 0.96 25 27 1.5e-05 0.00087 19.4 5.0 1 23 1019 1042 1019 1042 0.97 26 27 0.00017 0.01 16.0 0.3 2 23 1049 1070 1048 1070 0.96 27 27 3.9e-06 0.00024 21.1 0.6 1 23 1076 1098 1076 1098 0.98
Sequence Information
- Coding Sequence
- ATGCGGAGACGTCGGAACCTccaaattattttcaacaacACTTCTATAATACCTTTTAAATGGCGCGGCAAGTATCTCTGTTTCTACTGTAGCAAAGATATCTCAGAATACACAGAGCTGAGGAAACATACCAAATCACACGGCAATTGCTCCATAAAGGACCATTCTCTTAAAGTTCTGAAAGGAGGTCAGAACATGGAGATTAAAATCGATGTCTCGGATATATCTTGCGAAATTTGCACAGAGCCCTTTCCGTCCTTCGATGAGGTCATAACACATTTGTTTGTCAAACACAAACTTGAGTACGATAAAGGTGTAGATATGGCTATAGAAGAATATAAGCTGGTTGATCTCAGCTGTATTTGTTGTGACGAGAAATTCACGTACTTTGGTTATCTAGTATCTCATGTTAACAATAATCACCCGAAAAACTGTCTCATTTGCGATAAGTGCAATCAAAAGTTCAATAAAAAGAGAGATTTGTTCTCTCACATGAAGAATTATCATCGAGAAGGTGGGTACCAGTGTGAGCTGTGCCCACAAACTTTCAGCTCActaaatattctaagaaaacaCAGAAATAACAGGCATTTAACTAGATGTAACATCTGCCATCTAAAGCTACCCTCAGCAGCTTTGAAACAGAAGCATATAGAATTAGAACATCCAGATGATGGATCTCTACAATGCGACACATGTTTAAAAGAATTCCACACAAAACAAGGCCTAAGGATGCACAACAGAAAATGCAAAGGCGAAGAGATTTTCGAAATCGCCATCAAGAAAGAAGAATACGTTGCTATGGACCTCGACCAGAATTACGATGATCAAGTCAAAAGACCAAGCGTCAAGCAAATCAGGGAGAATATAGTTATAGTCATTAATATGTCTACGGCGAtaccttttaatttttataagaataagtTTAACTGTTTTTACTGTTCTAAAGATTTTCCGGATTCCGATTCGATGAGGGAACATACGGTTATGGAACACCCCGTGTGTGACGTCAAAGAGAAATGCATACGAAAGTGTAGGGAATCAGTCGCTTGCGTTAAAATCGATGTTTCATCCCTAGCTTATTTGGAATCAAGAACGGCAAAGCACAGTGATTGTGATCAGAGAAGGAGGAATCTTCAAATATTACTCAACAATACGACGTTGATACCTTTTAAATGGCGGGGCAAATACATGTGCTTCTATTGCGGTGATGCTTATGATACTCATAAGAGTCTAGCTAAGCATACGAAGGCTCATGGACCCTGTAGTCTGAAAGACAGAGCAATAAAACTAGTCAAATCCGCAGAAATAGAAATCAAAGTTGACATGTCTGATATTTCTTGCGAAATTTGCGCGGAATCCTTCAATGACATACACGATATTGTAGAACATCTGATCTCTAGCCATCAACTGCCTTACGATAAAAAAGTTGAAATCTTGATATCAGCGTACAGGCTAATTGATCTCAAGTGTCGCGTTTGCGGCCAATGTTTTGATTATTTACGTAATTTGATTAGTCATATGAATAAGGAGCATCCTAGTAATTGCTTCCCTTGCCCCGATTGTAGATTGAAGTTCAATAAAAAGAGAGATTTGGAGTCACATATCAGGTTTTACCACAGGGACACGCATCCTTGCACTAAATGCACGATGAAATTTTCTACCAATGCAGCTCTTCAGAGACATAGGTCTCGTGCACACAGTTCGACGTGCAACTTGTGCTTCCGTATATTTTCGTCAGACAAGAAAAGACTGGCTCATCTCAAGTCAGAACACGATTCTGATGAGAATAAATGTGGGTTCTGTTATGAGGTTCTGACGACAAAACAGGCTTTTATAAGACACGCTTTAAAATGCCAACATAATCCACGCGAAGAAACTAGCACCCCAGTTGAACCGGATAATAAAATAACCGTTAAAGAAATAAGGATGAGTTTAGCCTGTATCTTTAATATGACTACAGCATTGCCTTTTAAATATTGCATGAATAAGTTCAGGTGTTTTTATTGCCCCGAAAGCTTTGACTCGTGTGATGACCTAAAGGAACATTCGACGACACAACACCCTTACTGCGATATATCCTTTAAGTGCATGAAGTTAAAAAGTAGATATGATGGTATCAAAATCAAGTGCATGAGCTGTGGCTTGCGTTTCGCGTCCCTTTCTCTTCTCCAAAAACATATACTAGTCGACCATCCACAGAGTGAGGATAACATGAAGTGTAGTTACTGCTCCAAGGAGTTCCACAGCTCAATAGGTCTAATGCAGCATATAAGCAAATGTAAAGTCAAATTACTATCTCAGGAGGAACCTAACAGCTCGCTTACCGAGGATAGTATAGAACCGAAGAAAAAGCAGAATGTTCTTCAAATTAGACAGAATATACAGTGTGTACTCAACATGTCAACTGCTGTGCCTTTCAAATTCTTTTCTAAGTACTCTTGTTTTTATTGCTCTAAAAAATTCGTCGAATTTGATGAGTTACGGCAACACACTACGCTAGAACACCCTGTTTGCGATTTAAAAGCTAAATGCATGAAAAAATGCAAAGGAGAAAGGGTGTCAGTGAAAATAGATATATCTGATTTAGCTTGTAAAGTATGTGGCCTGCCTATGCCAAATTTGGAAGATTTGGTAAACCATTTGATTGAGACCCATAAAGCGAAGTACGATACGTCGATCACTGGCTGTCTCGAACCTTACAGATTGATAAAAGACAATATGCCATGCCCTATATGTCCAGATACGGTATTCAGATACTTCGGGATCTTACTGCGCCACATGAGTTCAGTACATAGCAACAACAACCGAATTTGCGACTTTTGCGGTAGAAGTTTTAGAAATGCCGCGAATTTAAACGTTCACATAACATATGCACATACGGGGTCTTGCGAATGCGATGTTTGCGGCGCTAAGTATAAAAACCAGTGGTGTTTAGCCCGCCATAGAGCGAGGACACACAACGCGAAAGACCATAAATGCCCTAAATGTCCCGAAAAGTTCCAATCCCAGTATCACACTCAAAAGCACTTAATCAAAATCCATAACATCGGACATAAGTGTAGTTATTGCGGCAAAATGTTTACTAGGAACTCCTTTATGAAGGACCATGTGAGAAGGACGCATTTAAAGGAGAAGAATATTCCTTGTTCGATATGTAACGAGAAGTTTTTCGATAATTACTTGTTGAGGATGCATATGGTCAAGCACGAGGGGGATAGGAAGTTCACTTGTACCGTCTGCGGGAAGGCGTTCTTGAGGCGCAGTAATTTGAGCTCGCATATGGAAATGCATAAAAAGTATGGTCATGTGCAGGTTTAG
- Protein Sequence
- MRRRRNLQIIFNNTSIIPFKWRGKYLCFYCSKDISEYTELRKHTKSHGNCSIKDHSLKVLKGGQNMEIKIDVSDISCEICTEPFPSFDEVITHLFVKHKLEYDKGVDMAIEEYKLVDLSCICCDEKFTYFGYLVSHVNNNHPKNCLICDKCNQKFNKKRDLFSHMKNYHREGGYQCELCPQTFSSLNILRKHRNNRHLTRCNICHLKLPSAALKQKHIELEHPDDGSLQCDTCLKEFHTKQGLRMHNRKCKGEEIFEIAIKKEEYVAMDLDQNYDDQVKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDSMREHTVMEHPVCDVKEKCIRKCRESVACVKIDVSSLAYLESRTAKHSDCDQRRRNLQILLNNTTLIPFKWRGKYMCFYCGDAYDTHKSLAKHTKAHGPCSLKDRAIKLVKSAEIEIKVDMSDISCEICAESFNDIHDIVEHLISSHQLPYDKKVEILISAYRLIDLKCRVCGQCFDYLRNLISHMNKEHPSNCFPCPDCRLKFNKKRDLESHIRFYHRDTHPCTKCTMKFSTNAALQRHRSRAHSSTCNLCFRIFSSDKKRLAHLKSEHDSDENKCGFCYEVLTTKQAFIRHALKCQHNPREETSTPVEPDNKITVKEIRMSLACIFNMTTALPFKYCMNKFRCFYCPESFDSCDDLKEHSTTQHPYCDISFKCMKLKSRYDGIKIKCMSCGLRFASLSLLQKHILVDHPQSEDNMKCSYCSKEFHSSIGLMQHISKCKVKLLSQEEPNSSLTEDSIEPKKKQNVLQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFVEFDELRQHTTLEHPVCDLKAKCMKKCKGERVSVKIDISDLACKVCGLPMPNLEDLVNHLIETHKAKYDTSITGCLEPYRLIKDNMPCPICPDTVFRYFGILLRHMSSVHSNNNRICDFCGRSFRNAANLNVHITYAHTGSCECDVCGAKYKNQWCLARHRARTHNAKDHKCPKCPEKFQSQYHTQKHLIKIHNIGHKCSYCGKMFTRNSFMKDHVRRTHLKEKNIPCSICNEKFFDNYLLRMHMVKHEGDRKFTCTVCGKAFLRRSNLSSHMEMHKKYGHVQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -