Hvir014343.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Heliothis virescens
Gene Symbol
-
Assembly
GCA_002382865.1
Location
NWSH01004552.1:5416-23948[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 6.2e-05 0.0037 17.4 2.2 1 23 424 446 424 446 0.97
2 22 0.0032 0.19 12.0 0.6 1 20 452 471 452 474 0.94
3 22 1.6e-05 0.00098 19.2 5.6 1 23 493 515 493 515 0.98
4 22 7.6e-05 0.0045 17.1 4.1 1 23 521 543 521 543 0.99
5 22 2.9e-05 0.0017 18.4 5.3 1 23 549 571 549 571 0.97
6 22 7.9e-05 0.0047 17.1 6.7 1 23 577 599 577 599 0.97
7 22 7.8e-05 0.0047 17.1 6.5 1 23 605 627 605 627 0.97
8 22 3.8e-07 2.3e-05 24.3 1.9 1 23 633 655 633 655 0.98
9 22 3.9e-05 0.0023 18.0 7.9 1 23 661 683 661 683 0.98
10 22 6.2e-06 0.00037 20.5 6.6 1 23 689 711 689 711 0.98
11 22 7.9e-06 0.00047 20.2 4.4 1 23 717 739 717 739 0.98
12 22 5.8e-06 0.00034 20.6 6.0 1 23 745 767 745 767 0.97
13 22 1.7e-05 0.001 19.1 7.1 1 23 773 795 773 795 0.97
14 22 2.4e-06 0.00014 21.8 6.0 1 23 801 823 801 823 0.98
15 22 4.6e-05 0.0028 17.8 7.9 1 23 829 851 829 851 0.97
16 22 1.9e-05 0.0011 19.0 7.7 1 23 857 879 857 879 0.98
17 22 0.00057 0.034 14.4 0.3 1 23 886 908 886 908 0.96
18 22 0.0078 0.47 10.8 2.0 8 23 914 929 913 929 0.96
19 22 4.6e-05 0.0028 17.8 7.9 1 23 935 957 935 957 0.97
20 22 1.9e-05 0.0011 19.0 7.7 1 23 963 985 963 985 0.98
21 22 0.00057 0.034 14.4 0.3 1 23 992 1014 992 1014 0.96
22 22 1.2 74 3.9 6.9 1 23 1025 1047 1025 1047 0.98

Sequence Information

Coding Sequence
ATGAATCAGGAACACCATAATATGAATACGGGTGGTGGCCAGCCTCCGGGAAGTTCTGAGGCCCAAAGAGTTCAGGCCTCACAACAGCAGCAGCAAAATAACTTGCCTGCCACGACATCCGCCACTGATTTACGAGTGAACTCAGCAGCAGTGAACGTCGCTTTGTCTAGTGTCGCGAAATATTGGGTGTTTACAAATTTATTTCCTGGACCTATCCCGCAAGTGTCAGTGTATGGATTACCAGCAGGTGCTAGGATTGAAAATGGGAAGCCTGTCCAGGATCTTGGTCAAGCTCATGCAAGTATATTAAATGGAGATCCAAATATTATTCTCGGCCACCATGCCGGCCAGTCACAAGTCACAGTATCTGCAGCCGGTGGCCAGCAGATACCAGTATCACAAATCATTGCCACACAATCTGGACAAACACATGAAGCGCTTGTGGCCCATAGTCAGCAAGCCGAGCTGGCAGCAGCCCAAGGCTCCGCCAACAACGCTCAGGTGTCAGTTAGTGCTGGCCAGGCCACTCATCAGCAGGTACCCAATAACCGGGTCGAGTTTGTACAACACCATAACATTGATATGGGACACCATTCACAACAACACATAATGCAGCAACAATTGATGGCTACGGCCAGGCCGGAACACAGCAACCAACAGATTCAACTCACGGTCAGCGAAGACGGCATAGTGACGGTGGTTGAACCAGCGGGCACTAAGATGGTGGACAAGGAAGAATTGCATGAGGCCATCAAGATGCCAAATGATCATACATTGACTGTACATCAGCTACAGCAGATTGTGGGGCAACAGGTAATAGACAGCGTAGTTCGCATAGAACAGGCTACGGGTGAGCCGGCGAATATTCTAGTGACCCACAACCCTGACGGCACCACTTCCATAGAAGCCAGTGCTGCCGACCCCCTCATTGTGAAGGACGAGAACAAAGCCAACAAGATTGAAGCGGCACAGTTCGCGATACCTACTGAGATAAAGGATATAAAGGGGATAGATTTAAAGAGTGTAGGCGCCATGGGAATGGAAGGTGCAGTAGTGAAAATATCAGCCGGTGCTTCAGAACACGACCTCCATGCGATGTACAAAGTCAATGTGGAGGACCTCTCACAGTTGCTAGCATACCATGAAGTCTTCGGGAAACTTAATTCGGAAGGCCAGCAGCAACAAGCAAAGGTTATTAACGAAGTGGAAGTCGAAGTCGAAGCGGGCACCAGCGCAGCCATGTCAGAAGCTGAGTCCTCGCCTGGCCACCACTCTTGTGATATTTGCGGGAAAATATTCCAGTTCCGATATCAACTTATCGTTCATAGGCGTTACCACGGCGAAAGTAAACCATTCACGTGTCAAGTTTGCGGTTCAGCGTTTGCTAATCCTGTCGAATTATCGAGGCATGGAAAATGTCATCTTGCTGGGGACCCGAACGAAAGGCACGCCAAGAGGATCCCTCAAGATAAGCCCTATGCCTGCACAACTTGCCACAAAACATTCTCCCGCAAAGAACATTTGGACAATCATGTTCGAAGTCACACTGGAGAAACTCCCtacagATGTGAATTCTGCGCGAAGACGTTCACCCGCAAAGAGCACATGGTAAACCACGTCAGAAAACATACGGGTGAAACTCCGCACCGATGTGATATATGCAAGAAGAGCTTTACAAGGAAAGAGCACTTTATGAACCATGTCATGTGGCACACAGGAGAAACCCCACACCGTTGCGACTTTTGTTCGAAGACGTTCACTCGTAAAGAGCACCTGTTGAACCACGTCCGCCAGCACACGGGCGAGTCGCCTCACCGCTGTAACTTCTGCAGCAAATCGTTCACGAGACGAGAGCATCTCGTCAATCATGTGCGACAACATACCGGAGAAACGCCGTTCCAGTGTGGATACTGTCCTAAAGCGTTCACTAGGAAGGACCACCTCGTGAACCACGTACGTCAGCACACCGGCGAATCTCCGCACAAGTGCTCGTTTTGCACAAAATCGTTCACCCGCAAGGAACACTTGACGAACCACGTGCGGCAACACACGGGAGAGTCGCCGCATCGCTGTACTTACTGCGCTAAATCTTTCACAAGGAAAGAACATCTAACTAACCATATCAGACAGCACACGGGAGAAACGCCACACAAGTGCACGTTCTGTCCGCGGGCCTTCGCGCGCAAGGAACATCTCAACAACCACATCCGCCAACACACCGGCGTCACTCCGCACTCCTGCTCCTACTGCAGCAAGAGCTTTACGAGGAAAGAACACCTCGTTAATCATATACGGCAACACACGGGCGAGACTCCGTTCAAGTGTACGTACTGTTCAAAGTCGTTCTCTCGTAAGGAGCACCTCACGAACCACGTGCACCTCCACACCGGCGAGACGCCGCACAAGTGTCCCTTCTGTACCAAAACATTCTCCAGGAAAGAGCATCTCACCAACCATGTCAGAATTCACACGGGCGAGTCTCCGCACCGCTGCGATTTCTGCCAGAAGACGTTTACGCGTAAGGAACACTTGACGAATCACTTGAAGCAGCACACCGGAGACACGGCGCATGTCTGTAAGGTCTGCTCCAAGCACTTCACCAGGAAAGAACATCTAGTTACACATATGAGGTCACACAGTTGCGGTGAGCGTCCGTTCAGTTGTGGCGAGTGCGGCAAGTCTTTCCCGTTGAAGGGCAACCTCTTATTCCATGAACGATCACACAACAAGAACNGTACCAAAACATTCTCCAGGAAAGAGCATCTCACCAACCATGTCAGAATTCACACGGGCGAGTCTCCTCACCGCTGCGATTTCTGCCAGAAGACGTTTACGCGTAAGGAACACTTGACGAATCACTTGAAGCAGCACACCGGAGACACTGCACATGTCTGTAAGGTCTGCTCCAAGCACTTCACCAGGAAAGAACATTTAGTTACGCATATGAGGTCACACAGTTGTGGTGAGCGTCCGTTCAGTTGTGGCGAGTGCGGCAAGTCTTTCCCGTTGAAGGGCAACCTCTTATTCCATGAACGATCACACAACAAGAATAATGCAAATGCAAACAAACCTCATAGGTGTGAAATTTGCTCTAAGGAGTTCCTCTGTAAAGGTCATTTGGTATCTCATCGGCGGACGCACGCTGATTGGACGGATAACGCGGCAGGCGGCGAAACTCCGGCTGACACAGAAGAATGCTCCGACGCTACTAAGTGTATCAAAGTGGAGCCTGATAGGACAGAAAGGAAACATGAAGTTAGGACTAGTTTAGAAACGAGACCGGCTGAGAACAATGTCGCACAAACGCAACAAAACACTGCTACTGTTATGATAACCAATAATCAGCAAGTCCGCGCGGCCAGCGTGGGCGCGGtgggggcgggcggcgcgggcggcacgttcgcgcacgccgcgccgcaccaCGCGGCCGGCCTCACGCACCACCCCGTCACCGTCAACTACTAG
Protein Sequence
MNQEHHNMNTGGGQPPGSSEAQRVQASQQQQQNNLPATTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPAGARIENGKPVQDLGQAHASILNGDPNIILGHHAGQSQVTVSAAGGQQIPVSQIIATQSGQTHEALVAHSQQAELAAAQGSANNAQVSVSAGQATHQQVPNNRVEFVQHHNIDMGHHSQQHIMQQQLMATARPEHSNQQIQLTVSEDGIVTVVEPAGTKMVDKEELHEAIKMPNDHTLTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAADPLIVKDENKANKIEAAQFAIPTEIKDIKGIDLKSVGAMGMEGAVVKISAGASEHDLHAMYKVNVEDLSQLLAYHEVFGKLNSEGQQQQAKVINEVEVEVEAGTSAAMSEAESSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSRHGKCHLAGDPNERHAKRIPQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHIRQHTGETPHKCTFCPRAFARKEHLNNHIRQHTGVTPHSCSYCSKSFTRKEHLVNHIRQHTGETPFKCTYCSKSFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCDFCQKTFTRKEHLTNHLKQHTGDTAHVCKVCSKHFTRKEHLVTHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHNKNXTKTFSRKEHLTNHVRIHTGESPHRCDFCQKTFTRKEHLTNHLKQHTGDTAHVCKVCSKHFTRKEHLVTHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHNKNNANANKPHRCEICSKEFLCKGHLVSHRRTHADWTDNAAGGETPADTEECSDATKCIKVEPDRTERKHEVRTSLETRPAENNVAQTQQNTATVMITNNQQVRAASVGAVGAGGAGGTFAHAAPHHAAGLTHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01030446;
90% Identity
-
80% Identity
-