Hvir004659.1
Basic Information
- Insect
- Heliothis virescens
- Gene Symbol
- -
- Assembly
- GCA_002382865.1
- Location
- NWSH01000297.1:66253-69089[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.7e-10 2.6e-07 30.0 0.1 1 39 23 62 23 67 0.93 2 2 0.15 80 2.8 0.1 23 40 775 792 775 795 0.87
Sequence Information
- Coding Sequence
- ATGTCAACGATTAACTTGCAGATGCCTCGCAAGTACTCCCGAACCTCTTCGCGTGCCACTACTTATACAAAAGAAGCACTGAAATTAGCCTTGgaagcaataaataataaagaactgACCTACGCAGCGGCTTCAAAAATGTATGGTATTCCTACATCGACACTTAATGACAGAGttctaaaaaaaacagcaatagTGAGTAAAACTCTTGGCAGGCCAACAGCTATCCCAGTGGAATTAGAAGAGAAACTTGCAAATTGCCTAAGAACACTTGAAAAATGGGGTTGGGGTTTATCACGAGCAGAGTTACTTGATGTAACCCaagaatttataaaaagaaatgacATAAAAACCCCTTTCAAAAACGGCAGACCGGGGCCGGACTGGTTCATTAATTTTAGAAAACGCCATAATTTATCCATAAAAAAGCCACAACCTGTAGAATaccttagaaaaaaaatgaccGATCCGTTTAtcattcatgaatattttactCTTCTTGAAAAGACGCTCCTCgagttaaatatttcaaatcccAAGCAAATCTGGAACCTCGACGAAACTTCAGTTTGTCTCGATCCCACAAAAACTAAAGTTGTAGGCGCCAGAGGGGAGCCCTGTACTCGTACAACGAGTGGTAGCGCTAAAGAAAATATCACGGTTTTGACAACCGTTAATGCAGCCGGTCAAAAATTGGACCCCCTGATCGTTTTTAAAGGAAAACATATGTATGAGCAGTGGACCCTACAAAactctaaaaaatatgatttcaacCTGGCGTATGCCGCCAGCAAACGAGGTTGGATGGAGaccagtattttttatgattacattttaaaagtatttatccCTAATTTGGGTGAAGAAAGGCCAGTATTATTGCTGTACGATGGACATGTCAGTCATGTCGATGACAAAGTGGTAGCTTTAGCAGTAGAGAACGACATCACCATATTAAAGCTTCCCGCACACACATCACATCTATTGCAACCACTAGACTTGGCTGTGTTCAAATCTTTTAAAACAATTTGGGATAAAAACCTCGTAAAATGGCAACGACAGAACATTGGAATGAAATTGAGAAAACAAAGTTTTGCTGAAATGTTCGCTGAAGCGTGGCAGGAAACCAAACCACAAGCCATACAAAATGGTTTTAAGAAAGGCGGCATATACCCTTTTAATCCTTTGGTAATACCAAGAAACAAGTTCAGTCCAGCAGCTTACGCCCGTTGGCAAAAACATAATATGACTTCAGTTACACCGAAAACTCTAATACAGATATGTATAGATGCTATTAGTAAGATCATGTCCCCGACTTCAGAACATAAATGTAGTCCGTTAAAACCGATTGCCACTTTTGAACAGATTCTTCTAGAAAAAGTTTCTCAAAATCCTCAAAACGCCAGGAATAATATAGCAGTTAAGTTAAAACGAATTGCGAAAGGTGCAGAAGTAATAACAAAATCATTCCTAGAAAAACAGCAAGCGACAGAAtcaacaaaagaaaaagaaatacaGAAGACAACAAAACGGAAACAAAAAACAGTACTGCAATCTGAAAATTATGCAACTGATCCTATACCAGGACCATCTGGTTTAAAAAAAGGCAAAGGAGTAGGAAAAAGATCTGAAGACAGGCATGATGAACATAGGAAGAGAAGTGTACAGATATTGGATGAGAAATCTGGCGAAATTATGACAAAGATACCCATGAAAAAGCGCAAAAGATCTGATAGCAGTACATCAATTGATAGTGTTATAATGAGCGTCCATAGCGATTCTGATTTAATAGATTCCTTAAGCGACATATTATCTGACTGTGATAAACTtactgattttaattattatgagGAAAACAAGACTGACTTAGAATTAACATTTAGAGAacaagaaattgaaaaaattattaaagaaatacaTGACATAGATAATAATCAACAGAAAAAAGCAAGTCAAAGAGACAATACTTGCGAAGATAAATGTGAGAtagaaaaaacacataaaatagaGACAGACACTAaggcaaacaataaaaataaagtgactATATTATCGTCCGTAAAACTCACACCAGAAAATCAAGCCTTCTATAAAATATTACCCAAAGATTGTCAACTAATCGATAAAGATTTAGATTTGTTTAAAAGTCAAAACCAAAAGCTGAAACAAAGTACAAGCTTATCTAATGTGCCAAAGAAAAAAACGAAGAAAGTAGATTGtcccacaaaaataataaaaagaaaccaAAGGGATGTCGGAGAAAACTTTTGTATTAACATGGATAAAGATGATGACAGTGTGGTCAAAAATGACATTGATGATTCGAAGATATACAATATCGGGGATACAGTTCTCGTTAGGTATTTCAAACGAACCTGGACTTATTACGTTGGTATTATTGAAGATAATAATTTCAATTCTAACCCATATATGTATAAGATAACATTCTACAGGACTGTTGGCAAGAAAAATACCCTGAAATTTGTTAGACCTAAGCGTAAAGACCAAGACTACGTACCTGATTCTAATATAGTTAAGGTGATAGAATtactacaaataaatgaaaatcctGTTGAGTATACCCttatgaatgatgatgatgagatatttttttaa
- Protein Sequence
- MSTINLQMPRKYSRTSSRATTYTKEALKLALEAINNKELTYAAASKMYGIPTSTLNDRVLKKTAIVSKTLGRPTAIPVELEEKLANCLRTLEKWGWGLSRAELLDVTQEFIKRNDIKTPFKNGRPGPDWFINFRKRHNLSIKKPQPVEYLRKKMTDPFIIHEYFTLLEKTLLELNISNPKQIWNLDETSVCLDPTKTKVVGARGEPCTRTTSGSAKENITVLTTVNAAGQKLDPLIVFKGKHMYEQWTLQNSKKYDFNLAYAASKRGWMETSIFYDYILKVFIPNLGEERPVLLLYDGHVSHVDDKVVALAVENDITILKLPAHTSHLLQPLDLAVFKSFKTIWDKNLVKWQRQNIGMKLRKQSFAEMFAEAWQETKPQAIQNGFKKGGIYPFNPLVIPRNKFSPAAYARWQKHNMTSVTPKTLIQICIDAISKIMSPTSEHKCSPLKPIATFEQILLEKVSQNPQNARNNIAVKLKRIAKGAEVITKSFLEKQQATESTKEKEIQKTTKRKQKTVLQSENYATDPIPGPSGLKKGKGVGKRSEDRHDEHRKRSVQILDEKSGEIMTKIPMKKRKRSDSSTSIDSVIMSVHSDSDLIDSLSDILSDCDKLTDFNYYEENKTDLELTFREQEIEKIIKEIHDIDNNQQKKASQRDNTCEDKCEIEKTHKIETDTKANNKNKVTILSSVKLTPENQAFYKILPKDCQLIDKDLDLFKSQNQKLKQSTSLSNVPKKKTKKVDCPTKIIKRNQRDVGENFCINMDKDDDSVVKNDIDDSKIYNIGDTVLVRYFKRTWTYYVGIIEDNNFNSNPYMYKITFYRTVGKKNTLKFVRPKRKDQDYVPDSNIVKVIELLQINENPVEYTLMNDDDEIFF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -