Hvir005911.1
Basic Information
- Insect
- Heliothis virescens
- Gene Symbol
- -
- Assembly
- GCA_002382865.1
- Location
- NWSH01002782.1:116145-118373[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-11 8e-09 34.8 0.1 3 37 17 51 16 55 0.95 2 2 1.5e-11 8e-09 34.8 0.1 3 37 140 174 139 178 0.95
Sequence Information
- Coding Sequence
- atgGTACGTACGTACAAAAAGAAGAGTTTAAGGAGAAGTTGGCCTGTAGAAAGCATGAAACAGGCAATCGATGCAGTCTTAAGCAAAACAGCAGGATACAGAAAAGCAGCTCAACTATACGGTGTTCCGCAGACCACATTGGAGCGTCACGTCGCCAAAATAAAAAAGGGCGAGTTGTCTCTTGACTCCACTCCAGGTAATTTTAAGCCCGTATTTTCCAAAACAGAAGAAGATGAGTTAGTGAGATATATTAAAGATATGGAGAAACGGTTGTTTGGATTGACCACTGTCGTCTTACGAAAGTTAGCGTATCAGCTGGCAGAAAAAAATGCCAAGGTTCACAATTTTAACNTtgttttaggtataaaaatgGTACGTACGTACAAAAAGAAGAGTTTAAGGAGAAGTTGGCCTGTAGAAAGCATGAAACAGGCAATCGATGCAGTCTTAAGCAAAACAGCAGGATACAGAAAAGCAGCTCAACTATACGGTGTTCCGCAGACCACATTAGAGCGTCACGTCGCCAAAATAAAAAAGGGCGAGTTGTCTCTTGACTCCACTCCAGattgtgattTTTTAGCTGCATCAACAACAGACGTGCCGCTGACAAATGATGAGGCTGAAACAGCTTCCACAACTGCTGAAGATCAGCAGCAACTATCATCTGCTATTGAACAACCTCTTGGACCATTTTTGTCCGCACCTAAGTCACCTTCACCACAGAGAACTCCTATCTCAGAGCCCCAGGCTGGACCATCCATTCAAAACGATAATAGTATAATACAATCTCCGATTCGAAGAGCATGTCGTGACTTAACAACTTTCTTCGAAAATGCGTCTCCCAAGGACATTCTCCCGATACCAAGCGTTGAACAAAGAAGCCAAACAAGGAAAAAATATCGCAGAGGGAAAACTGCAATTCTTACATCAACGCCCTACAAAAACGAGCTAGAAGAGCGAAATAAACTAAAGCGGACGAAGAAATGTTCAAATGCAAATGATCCCCGTTTGAAGAAAAatgcaaagaaacaaaaatctCGCTCTGATGTAGAGAATGCAGACGAGGATACTTTATGCCTGTATTGCGTTGACGTCAACAATTCTTATTTGAAGTCTTCAGAGGGTTGGGTAGCCTGCCAGTTATGTGGCCGTTGGTCTCATACAGCTTGCGCTGGTGTTGACGACGAGAACGCAGAAGAAATACACATTTGTTTATACTGTGATACATAA
- Protein Sequence
- MVRTYKKKSLRRSWPVESMKQAIDAVLSKTAGYRKAAQLYGVPQTTLERHVAKIKKGELSLDSTPGNFKPVFSKTEEDELVRYIKDMEKRLFGLTTVVLRKLAYQLAEKNAKVHNFNXVLGIKMVRTYKKKSLRRSWPVESMKQAIDAVLSKTAGYRKAAQLYGVPQTTLERHVAKIKKGELSLDSTPDCDFLAASTTDVPLTNDEAETASTTAEDQQQLSSAIEQPLGPFLSAPKSPSPQRTPISEPQAGPSIQNDNSIIQSPIRRACRDLTTFFENASPKDILPIPSVEQRSQTRKKYRRGKTAILTSTPYKNELEERNKLKRTKKCSNANDPRLKKNAKKQKSRSDVENADEDTLCLYCVDVNNSYLKSSEGWVACQLCGRWSHTACAGVDDENAEEIHICLYCDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -