Hpel019682.1
Basic Information
- Insect
- Heliothis peltigera
- Gene Symbol
- -
- Assembly
- GCA_958496145.1
- Location
- OY292350.1:2388163-2393956[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.14 9.2 7.3 0.4 2 23 17 39 16 39 0.94 2 17 0.41 27 5.8 0.4 3 23 62 82 61 82 0.97 3 17 0.0011 0.072 13.9 0.9 1 23 86 108 86 108 0.97 4 17 3 2e+02 3.1 3.1 1 10 114 123 114 123 0.97 5 17 0.18 12 6.9 1.1 2 23 145 167 144 167 0.92 6 17 5.5e-05 0.0036 18.0 2.0 2 23 175 197 174 197 0.96 7 17 0.015 0.96 10.4 2.2 1 23 203 225 203 225 0.97 8 17 2.4e-05 0.0016 19.2 5.3 1 23 231 253 231 253 0.98 9 17 0.00014 0.0088 16.8 0.9 1 23 259 282 259 282 0.95 10 17 1 66 4.6 0.4 1 23 372 395 372 395 0.90 11 17 0.013 0.83 10.6 0.2 2 23 421 443 420 443 0.96 12 17 0.0026 0.17 12.8 1.3 1 23 555 578 555 578 0.93 13 17 0.65 43 5.2 0.5 2 23 650 671 649 671 0.96 14 17 0.00057 0.037 14.8 0.4 1 23 675 697 675 697 0.96 15 17 0.0011 0.074 13.9 1.0 1 23 702 725 702 725 0.97 16 17 0.0047 0.3 12.0 0.6 2 21 733 752 733 755 0.88 17 17 0.00015 0.01 16.6 1.7 1 21 761 781 761 782 0.96
Sequence Information
- Coding Sequence
- ATGCCAAGATCTTCGCAACATCTCCTCAAAGCTGACATCACAgatttaaaatgcaaaatatgtGACAAAAACCTCTTAAAACTAAACGATTTAGctgaacatttaaaaaaggatCATAATAAATCTATTACTGGGGGCATAAGCGAGATTATTCCattcaaatttgaaaatgatgGGTTGCTATGCGCCATCTGTGGAGCGGAGTACTCGACCTTCAAAATACTACAAGAACATATGCATAATCACTTCAGAAACCATATCTGTGAAGTCTGCAGCGCTGGTTTTGTCACCAAACGATTGCTAGTCAGCCACAGAAGGAGACATGGGGGCGAATCACAATTTAAATGCGGGCATTGCGAAAAAACATTCCTTTGCGCTCAAAAACGGAGAGACCACGAACAGAGAATGCATTTAGGTATCAAGAAGAGAAACAAGTGTAAGTTGTGTGAAGAGAAATTTGAGGACTACTGGACTAAGCAGAACCATATGGTGCAGAAGCATGGTGCTCCTCCTATAGCCTTAAAATGTACAGCTTGCGACAGGACGTTTAATAACCGGCGTTCGTTGACGAGACACGTGAAGAAGGATCACTTGATGGAGAGAGAACATGTGTGCTCAGTGTGCAATGCGCGATATTTTCTCAAACGACATCTAATGGAGCATATGATCGTACACACTGGTATTAAGAAGTTTGAATGCCACGTGTGCCCTAAGCGCTATGCGACCAAAAAGTCGTTATGTCAGCATTTAAGGTCGCACGCCGATGATCGCAGATTCGCTTGTGCCGTTTGCGGTTTAGCGTTCGTACAGAAATGCACGTTGAAAAGTCACATGAAAGCCAAGCATGGTCTCCGTTCCCGAACTATACGCGATAGTTCCCCCATTATATTTGAAGAAGAAGACAAGACTCTAACACTAGACAGAAAGCTGAACTTTTCATCTTTCGTGTCTATAAGACCAGTCGGCAAGAAAGCCATACCGTGGGTCAGAGAGCAGCAGAAGAAAATAGCTCAAGAACGTCGCTTAACCGAATTGGATTGGCAGTTTGATAATATAAAGACAATACTGAAATGTTCGAACGCGTCTCCGGTGCGTTGTAGGGTTGGCTCTCGCTTCGCCTGCAGCTACTGCCTCGATCAATTCCAAAACCCAACAGAATTACGTTCCCATTCTTTGCAAGACCACGCGAATGATAAACCAGAGTTCTTCAACGCGAGATCGCTGTCCAGACACATCGTGTATTTGGATATAACGGGTTTGAAGTGCAAAATTTGCGATATGTCTATCGACAGTCTAGATTTTTTGATGGATCACTTGAAGTCTGTACATGACGAGCTTATTTATAAGCAAATAAAGAACCAGATTGTTCCTTTTAAATATGATGGGAGGACGATTTTGTGTGGAGTGTGTGCAGCTGATATTGGAGACTGCTCCGATTTCCAAGACCACATGTCGGAACATTATAGGAATTATATCTGTGGTTTTTgtaccgAACCTGACTCCGTACTTATCGAGGTGGAAGTTGATTCCACGCTATTCATGGCATCAGACGATGAGACTGAAAATTCGAAAATGAACGAAGTTGACAAACACAGGGAAAATATACGTACCATACTGCTTTGTAGTAACGCGACACCGATTGGAAGGTACGGCAGTCAAGGGTACAGCTGTTGTTACTGCCCAGATATCTTCTCAGACCCAAAGGACTTGAAGAAACATACAATAGAACAACacaatgaagaaaatatctcTTCCTACATGAATAACTATACGATGTTGAATTATATCGTTAAATTGGACGTGACTGGGTTACGTTGTGACATTTGTACGTCACCATTTGATGGCGTACAAGGAATTATCGACCATTTGACAGAAGAACATCAAAAATTCTTCCACACTGATATTGGGAATCATATCGTTCCGTTTCGCTTCGATACGGAAATTCTTCGCTGTGTGGAGTGCTCGTTCGAgtataacaatttcaaaatactgCTTGAACATATGAATACTCATTTTAGTAATCATATATGTGAGGTTTGTGAGGCTGGTTTTGTGAATAGGAGGATGCTGCAAGCTCACATGTATCGCCACAAGATTGGAGTGTTCCGTTGCGGTTTTTGTACTAAAGTGTTTGATACTAGAATTAAGATGAAGGTCCATGAAAGAATGGTGCATTTGTACTTGAAAAAACGGCCGCGTTGCACTATTTGTGGGAAGAAGTTCAATGACTTTAAGAAGATGATACAGCATGAAGCTGATGACCATGGTCTTCAGCGGGACTTCAAGTGTGAGCTATGTAACAGAATGTTTACGACACAGCAGTCTTTTAAGATTCATAAGAGGTTGTATTGCGCTACAACTGAATAA
- Protein Sequence
- MPRSSQHLLKADITDLKCKICDKNLLKLNDLAEHLKKDHNKSITGGISEIIPFKFENDGLLCAICGAEYSTFKILQEHMHNHFRNHICEVCSAGFVTKRLLVSHRRRHGGESQFKCGHCEKTFLCAQKRRDHEQRMHLGIKKRNKCKLCEEKFEDYWTKQNHMVQKHGAPPIALKCTACDRTFNNRRSLTRHVKKDHLMEREHVCSVCNARYFLKRHLMEHMIVHTGIKKFECHVCPKRYATKKSLCQHLRSHADDRRFACAVCGLAFVQKCTLKSHMKAKHGLRSRTIRDSSPIIFEEEDKTLTLDRKLNFSSFVSIRPVGKKAIPWVREQQKKIAQERRLTELDWQFDNIKTILKCSNASPVRCRVGSRFACSYCLDQFQNPTELRSHSLQDHANDKPEFFNARSLSRHIVYLDITGLKCKICDMSIDSLDFLMDHLKSVHDELIYKQIKNQIVPFKYDGRTILCGVCAADIGDCSDFQDHMSEHYRNYICGFCTEPDSVLIEVEVDSTLFMASDDETENSKMNEVDKHRENIRTILLCSNATPIGRYGSQGYSCCYCPDIFSDPKDLKKHTIEQHNEENISSYMNNYTMLNYIVKLDVTGLRCDICTSPFDGVQGIIDHLTEEHQKFFHTDIGNHIVPFRFDTEILRCVECSFEYNNFKILLEHMNTHFSNHICEVCEAGFVNRRMLQAHMYRHKIGVFRCGFCTKVFDTRIKMKVHERMVHLYLKKRPRCTICGKKFNDFKKMIQHEADDHGLQRDFKCELCNRMFTTQQSFKIHKRLYCATTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -