Hpel018447.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Heliothis peltigera
Gene Symbol
-
Assembly
GCA_958496145.1
Location
OY292347.1:466614-468205[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 1.1 71 4.5 0.2 2 23 154 176 153 176 0.89
2 10 0.0035 0.23 12.4 0.1 1 20 179 198 179 200 0.94
3 10 0.0016 0.11 13.4 3.3 1 23 204 227 204 227 0.95
4 10 6.1e-07 4e-05 24.2 0.8 1 23 230 252 230 252 0.98
5 10 0.00017 0.011 16.5 0.4 2 21 257 276 256 277 0.93
6 10 0.00014 0.0092 16.8 0.8 1 23 296 319 296 319 0.92
7 10 4.1e-05 0.0027 18.4 2.3 1 23 325 347 325 347 0.97
8 10 8e-06 0.00052 20.7 1.0 1 23 353 375 353 375 0.99
9 10 0.0013 0.083 13.7 0.3 1 23 381 404 381 404 0.95
10 10 0.00033 0.021 15.6 3.3 2 23 410 431 409 432 0.94

Sequence Information

Coding Sequence
atgatagaAGAGTCCgaattaaatattcttgtGTCTAATGTCTTGGGtgaaaatcggttcagccatTGCAGATTATGTTTGTCGGAAATTCAAGAACACTACGTGCGTTTTCATGATTCGGTATCGGTGGATGCCACAAGTGGGACTTTTGAAACGCTTTCCGAAGTATTGACCAAACTTTTGGGTGCTGACATCTGTGATGAGATCGCCGGTATTGATGCAGTATGCATGTCATGTGTCGATAAAGCACTTGAATCTATGAAGTTCCTTCaattatgtgaaaaatctaCTAATGTACTGGACAATGTCTTCAACAATCTTACAAATACACTAAGTATTGATATTGACGCCACCAAACCTGATCATACTCTCTACATAGCAGTCGGTGAACATGAATCCCAACTAATTGTAGTTAATAATGAAGCAAAGAAGAAGAAAGCCGTATCGAAAGATATTCTCAGCTGTTCTACATGCAATGAGCAATATGAAGACATTTTGGAGTTGAAACTCCATAACATATCAACTCATGGAACATTCACTTGTGAGAAGTGCCATGAAACATTAGATAACGAGAGTGAACTGATGGCTCATGAAGAGAGCCAACAGACACATGTGTGCACAGAGTGTAATAAGGTTAGATGCACTGAGGAGAGCTTGAAACAACATCAGGACAAAGCCCATGGTCTGTATGTATGCAAAGACTGTGGCAaatctttcaaaaatatagataaattgCAGATCCATGAACAAAAGCATATATCCAAAAGTGAATGTCCTAAGTGTGGTAAAAGCTATAACACAAAGGGTTTCTTTTTGAAACATGTTAAGTTATGCCTGGAAGACCTTTTGGACCCACACCCAATAAggagtaatattaaaaagacaCACTTTTGTGATAAATGTGGTAAAGGTTATAGTACACCTGGGGGATTAAGGGTACATAACAGATTCGTTCATGGCAATGCTAAGCCACATGTATGTAAATTCTGTAACAAGCAGTTCACTGCGCCAAGCTATTTGAAAGTTCATATGGTGAAGCATACTGGGGAAAAGAATTTCAAGTGTGACCTATGTGGCCGACAGTTTGTCTCCAAAGAAGCTTTGTTGTATCACACTAGAAGACACATGGGGGACAAGCCATACAGTTGCACATTGTGTGATGAGAAGTTTGTCAATGCCTCAGCTAGAGCTGaacatataaaattcaaacatgTTGGGCCAACCCTGATGTGTGAGATCTGCTCTCGTAAATTCTTTACTCCCAACTTCTTGAAGCAGCATATTAAGAAGCATCATGATCCTTCCAATAAGCTGTATGCTGGTAGAAGTCTCATACCTCCCAATGTTCCAGCTGTAGAGAACATGAGAGTTAGATTCATTGATTCATGa
Protein Sequence
MIEESELNILVSNVLGENRFSHCRLCLSEIQEHYVRFHDSVSVDATSGTFETLSEVLTKLLGADICDEIAGIDAVCMSCVDKALESMKFLQLCEKSTNVLDNVFNNLTNTLSIDIDATKPDHTLYIAVGEHESQLIVVNNEAKKKKAVSKDILSCSTCNEQYEDILELKLHNISTHGTFTCEKCHETLDNESELMAHEESQQTHVCTECNKVRCTEESLKQHQDKAHGLYVCKDCGKSFKNIDKLQIHEQKHISKSECPKCGKSYNTKGFFLKHVKLCLEDLLDPHPIRSNIKKTHFCDKCGKGYSTPGGLRVHNRFVHGNAKPHVCKFCNKQFTAPSYLKVHMVKHTGEKNFKCDLCGRQFVSKEALLYHTRRHMGDKPYSCTLCDEKFVNASARAEHIKFKHVGPTLMCEICSRKFFTPNFLKQHIKKHHDPSNKLYAGRSLIPPNVPAVENMRVRFIDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01425368;
90% Identity
iTF_00783787;
80% Identity
-