Hzea018618.1
Basic Information
- Insect
- Helicoverpa zea
- Gene Symbol
- -
- Assembly
- GCA_002150865.1
- Location
- KZ117451.1:20091-34805[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.052 3.7 8.3 0.7 1 23 375 397 375 397 0.98 2 11 0.0073 0.51 11.0 8.5 1 23 404 426 404 427 0.94 3 11 0.19 14 6.5 2.2 1 23 431 453 431 453 0.97 4 11 0.056 3.9 8.2 2.1 1 23 458 481 458 481 0.97 5 11 0.014 0.98 10.1 0.2 1 23 485 508 485 508 0.94 6 11 0.27 19 6.0 0.2 2 21 521 540 521 545 0.90 7 11 1.1 81 4.1 0.4 2 23 599 621 598 621 0.94 8 11 0.0029 0.21 12.2 1.2 2 23 637 658 636 658 0.94 9 11 2e-05 0.0014 19.1 1.4 1 23 664 686 664 686 0.99 10 11 7.5e-06 0.00053 20.4 3.9 1 23 693 715 693 715 0.98 11 11 2.8e-05 0.002 18.6 1.3 1 23 721 744 721 744 0.95
Sequence Information
- Coding Sequence
- ATGAGATGCTGTGTGCCGAATTGCAAGAATGATTCGAGACACATATCTAAATCGCAAGGAATCACCTTCCATGTcttTCCTAATGAGGCCTCACTCCGGTCTGCATGGCTCAAAGCCCTAGGTAAAGAGACTTGGGAGCCAAAAGAGAGAAGTGCAGTATGCTCGGAGCATTTTCTATGCGACGACCTTTATGAAACTAAGAGTGGCCTCAGAAAAGTACGGTCAGGAGCTGTACCTTTGATTTTACAGgaCACAATGACCTGTGAATATGGAGAACCGGCCACCTTGAAGgCTTGCAGAATATGCCTTGTAATGGATGTAAAGTTAATACCAATAAGAGTATGTAATTTGGAACAAGCTTATGAAAATCTCACTGGAATTTCGttaaatgAAGATAAACTACCCCAGAAGCTGTGCGTGGAATGTGTACAAAGATTAAACAATTGTAGTCAGTTCCGGCTGAAGAGTTTGCGAGCTAACTCCTTGATGTTAGAAGTTATTAAAAAGCATGATATCttaacagtacaaaacataaaaactataAACCGAGAAAACAACCAGCTCATCTCTACATTATCGTATAAAAAATTCGAAGTGAACCATTATGATTCTTACTACGAATATACAGACCCTATATGGATCGAGGAAAAACCTTCAACCTGCAACATCGAAGTCAAAGTTGAGAACGAAATATTTCTCCCAGAAGAAATAGCGGTCAAAATTAACGATGATGGATTTAACGAGGTCGGAATTAACGAAGCTGGAATTAATGATAACGGAATTACCGACGGATTTAGTGATAATGACGCTTCTGACAAAGAATTCGTCATAGTGTCTGATAAAGATTATTCTTCAGATGACAGTTTACCTTTGGAGAAATGTAAGACAAAGAGAACTCGAAAACGCAAAATTAAGGATGAGAAACCGGTTAAAACggttaaaaaagttaaaaaggtTAAAGAAGTTAATGATAGTAATGAACCGAAAGTTGATAGGCGTCGTAAGCCTTTCTTAAACGATGATTTGAACGAAACTTTGTTTACAATAAGAGATTTGACCATTGAAGAGCAGATAgctgaaatattgaaaagacGGGATTCGGCGAATTATAAGAACGCCATTTATAAGTGTACCGCGTGTTTTAAAGGGTTTTTGGATGAAGACGCTTATAATAGTCACATGACAAGACATACAGATCAATGTGGCGAACACGAATGCGGTGTATGCAAAACACATTTTAAGCATCCGCACGCATTACGCAAACATATAACTGCCCACCACACTCAGAGGTTCAGCTGCAAGCAATGTCCGTATATCACTACGCATAGACAGACAGCCAGATTGCACGAGAGATGGCATAAGGGGACTAAGTACAAGTGCCCGCATTGTCAAGATGAGTTTGTTAAATTCACAACATATATGGGGCATATACGCATAAAGCACCCTTCAGACTTCGTCTGCGGTCTCTGCGGATTCTCCTTTGTGAGCGCTAAAGGCATAGAGCTACATAAGAAACTCAAACATAGACTGGATAATGTACCGatccCAGACGATGGTCCACAATGTGAACCTTGTAACGTGCGTTTCGTTAATACTGACGCATACAAGAGACATTTGACCGTATCCGCGAGACATAATGCAGATGCAGGCGTAGAAAAAAGAGTAAGAAATAAACCCCGTAAAGGCAGAAAAACTAAAGAGATGAAAGAGATGGAGCGTCGTGCGAGAGAGAACAGCGACTCGGAAGATAAGAGACGCTACCCCAGCCAGATAAGGAGAGCCGAGGGACCTATACCCTGTGAACAGTGTGGTCTTCAATTAGAAGACTCGCGAGCCTACCACGGTCACTTCCGACGTATGCATCCCGACAAGAATCGAACCAACTACCCCTCTATGAAGTCACCCTGTATGTGTGAAGTCTGTGGCAGAATGTTCCAAAGCTTCGCCCTCCTAAAAGACCACACCTACATTCACACTGACGAGCGTCCCTTCAAATGCGAGATCTGTTCGAAGAGTTTCCGCATGAAGCAACGCCTCGTCGCCCACAGGCGCGTCCACAGTGAAGTTCGCGCGAGCTACGTCTGCAAGCTCTGCGGCAAACAGTTCTCAACGCATAGCAACCGACAGAGGCACATGTTTATTCACACCGGATTGAAGCCGTTTAAATGTGAGATGTGTGGAAAAGGATTCAAGCATGCGAGCGAGAAGAGAGCGCATATCACGTATGTGCATCTGAAAAAGCCGTGGCCTAAACGCGCTAGGGGGAAGCGGAGACCTGACACTAGACAGgGTCAAATGCCTCCAGGTCAAGGTGAGATGGACATGGCACCACCCATGTGGCCCTGTGACCCCAAAATGGCAGAAATGGGCCCCATGATCGAAGATAAAcctgtttattataatttaaagataTAA
- Protein Sequence
- MRCCVPNCKNDSRHISKSQGITFHVFPNEASLRSAWLKALGKETWEPKERSAVCSEHFLCDDLYETKSGLRKVRSGAVPLILQDTMTCEYGEPATLKACRICLVMDVKLIPIRVCNLEQAYENLTGISLNEDKLPQKLCVECVQRLNNCSQFRLKSLRANSLMLEVIKKHDILTVQNIKTINRENNQLISTLSYKKFEVNHYDSYYEYTDPIWIEEKPSTCNIEVKVENEIFLPEEIAVKINDDGFNEVGINEAGINDNGITDGFSDNDASDKEFVIVSDKDYSSDDSLPLEKCKTKRTRKRKIKDEKPVKTVKKVKKVKEVNDSNEPKVDRRRKPFLNDDLNETLFTIRDLTIEEQIAEILKRRDSANYKNAIYKCTACFKGFLDEDAYNSHMTRHTDQCGEHECGVCKTHFKHPHALRKHITAHHTQRFSCKQCPYITTHRQTARLHERWHKGTKYKCPHCQDEFVKFTTYMGHIRIKHPSDFVCGLCGFSFVSAKGIELHKKLKHRLDNVPIPDDGPQCEPCNVRFVNTDAYKRHLTVSARHNADAGVEKRVRNKPRKGRKTKEMKEMERRARENSDSEDKRRYPSQIRRAEGPIPCEQCGLQLEDSRAYHGHFRRMHPDKNRTNYPSMKSPCMCEVCGRMFQSFALLKDHTYIHTDERPFKCEICSKSFRMKQRLVAHRRVHSEVRASYVCKLCGKQFSTHSNRQRHMFIHTGLKPFKCEMCGKGFKHASEKRAHITYVHLKKPWPKRARGKRRPDTRQGQMPPGQGEMDMAPPMWPCDPKMAEMGPMIEDKPVYYNLKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00038854;
- 90% Identity
- iTF_00784454;
- 80% Identity
- iTF_00784454;