Hzea018946.1
Basic Information
- Insect
- Helicoverpa zea
- Gene Symbol
- -
- Assembly
- GCA_002150865.1
- Location
- KZ117563.1:206933-214648[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.9 1.3e+02 3.4 0.3 2 23 6 27 5 27 0.96 2 11 0.04 2.8 8.7 0.4 2 23 1000 1022 1000 1022 0.95 3 11 2.2 1.5e+02 3.2 0.2 1 23 1097 1119 1097 1119 0.93 4 11 1.2e-05 0.00086 19.7 1.7 2 23 1122 1143 1121 1143 0.97 5 11 0.00016 0.011 16.2 2.4 1 23 1149 1171 1149 1171 0.98 6 11 0.023 1.6 9.4 0.4 2 20 1178 1196 1177 1197 0.95 7 11 6.1 4.3e+02 1.8 0.2 9 20 1236 1247 1234 1250 0.85 8 11 0.0033 0.23 12.1 0.8 1 23 1258 1280 1258 1280 0.98 9 11 0.0041 0.29 11.8 7.2 1 23 1286 1308 1286 1308 0.98 10 11 4.8e-06 0.00034 21.0 1.3 1 23 1314 1338 1314 1338 0.98 11 11 0.0008 0.056 14.0 4.2 1 23 1344 1366 1344 1367 0.95
Sequence Information
- Coding Sequence
- ATGGACCAGCTCGTGCAGTGTCCCGTCTGCACGCTGTTCCTCCACAATGGGATCACTCTCGAGTCCCACTTGGATACTCACCCCAAAGACCAGGTTATAAAAGCTTTGTGCAATATAGCATCAAACAAGAATTCTAGTTTTGCAAGCAGAACTTCCACACCAGTACATTCTGAGCGGTCGTACAGGAGCAGGTCACGGACACCTGCTACTGATGATAGCACCAAGTGGCCGGGGTCAAGGAGTACAGAACATGAGCGCTACTGGCGTAGAACACCTAGCAGAACTCCTAAGAGTACAGCTCCATCTAGAAATGGCACGCCTGACATAAGAATGCTTGATGTAAACTTTGAGAACCATGGCCTTCCTGCTGCAGGTGCCGGTCAGCATGTAAACAATCCATTTCTTTTAAAAGCTGATAAACTTCAGCAGACCTTCCAGTCTCCTGCTGTACCAGACTTTGATCCACAGTTTGTTTACTACCCAGAGCAACAGGAGGACAGAGAGATAAAATTTTCCCGTAGTGCTGAATACAATGCAATGGACAACAGTAACAATTTGTTTTCTTACAATGTACCAACTATGCCCGGACCAGGTGTGAAATTGTTACCAGCAATGCCTAGGAAAGCAAATGACCTTGTCAAAGTTCTACCTAAACCAAATAACATACTTCTTAAGGCCAACATGGGTGGTGTGCAATATATAGGTCCAGGGGTCAAACCTATGCATGTTATGGTACCGTCAGCTCCCACGTTTATGCAGAAGAATGTGCAAAACAATATGATTATGACAGGCAGTGGTGCCAGCCCACAGATGCACATTGATACCAAAACAGCTTCACCTCCACTAGCTAGCAATCAACTGAACCAAATGACTTCTGGTGCATTTACTCCAGGAACTACTGTTGTTACCCAAAACTCCCAAATTATATACAGAGAAATGGTGCACAATATAGACGGTAAGCCCTTTATAACTACAATGCCGACAGTACTAGGAGGCCATGAGAATGTCAGTAACTTAGCGCAAGCCAGCTCCATGTACCAGAATGTAATGGTTGTAGACCAATTTGGAAACACTTCATGTATGTACACAACACCTCAGCAAATGATGAACAAAGGATGTCCTACTTCCATGTATAATGAACCTGGGAGTCTAATGCCTAGTGTCCACATTGATAAATCTGTACCAACTATGAATGATCCTAAAACACTTATTATTGAGGTTGGTCCACTTATTGCTCCTGGTCATGATAATATTTGTGAGGATCCTAGTTCCTCCATAACACAGCCAGTACAGAGCAGTTCAGTTGATAACACTGAGAGACCTGTAGAGGTATTAGATTCAAAATTTGATATGCCAGGAGGAACTAAAGGTTTGAAAATTTTAAGTAACATCAAGGTTGAAGTTCCAGTGCAACATCATAAGAATATGGTGAATACAGTGATGGATCTGACAGGCAGCACAGAGGCTGAGTATTCTGTTGAGCGAGCAGAAAGCCCAGAGAAGATCCTGCCTGATTTAGATGATAACAACCAACTATCATCGGATGACACCCAGCCATCATCTATGTCCAGTGGTGACAGCATGGTCTCGCATACATTCTCTGTGATAAAGAATGTTGGTAACCCAAGCAAAAGTTCAGTAGACAAATTGGATACGGACTTTTCTGACAGCTGTCCTGTGCCAGATTTAATATGTAATGAGAAACCTTCCATATCACCTTGTAGTGAGTTGTCAGAAAATGGCGACAATTCAACCGATCGTACCTCAATATCTCCCAAACCTGAGAGCAATCAAGTTAGCCTTAGTAACTTAGGACTTCCAGAAAAGAAAAATCCGCTTTCACAAAAACCATACAGGCACAACACACTAAGACTGAACAACATTTTCGTGAAGAAGCACAAGAAGATTCTGCAAATTAAGAATGCCAAGTCCTTTCCTGTGAAAACAAAGAAGTCTGAACACAGAGACAATGTCCCAACATCATCAACTTGCAGATCACCAGAAAATTTTAGCATGAATAAATTGCACCAGACTGATAAATCTGACAGCAAGGAAAAGACTAACCTTTTGCAGACCATATCTGTGGAAGAGATCAAAGAGAATGATGACAATAATGACTTTGATGATGATATAGAAGAACAATCTATGGACATAGAACCAGTTGCTGCATCCAGCTTGGCGCAGCCGGAGTTTGCGGCCGGCATTGAGATGATACAAGTGAAGGAGGAAATAAATACAAGCAATGAAGGAGGTTTCAGCAACGAGCCAGTGACTACGGACCGCATGCTAACACCACTAGAGACATTGCGCCCCATTAACGTTATTAACTATGGCAACATGTCCAACGAGGATTTCAACGAAGAGTCTAATGACAGGGAGTTGTTGGACCTTGAAGCGGCCTCTAAAAACAAGCAGTTTGTCAGCATGATGAACGAGAACTACTTCGGGGACAATATTTACGCGGACTACTTTACTGCGGACCGCGTGGAAGGGTTCGATGCGGAGCGCGACGCCGCGGCTTTCAAGGAGGGAGGCAAGGACGGTATGTACCTCTGGGGTGAGCCTTCACAGAAAGACAACGAGTTCGTACTGCCTAACTTTATACACGAGAGTTACAAGATAGCTGAGAGTAACGGCATAGATTATTCAGAGCTAGGTGCTAGAGAAGTGCAGGTAGATGTGGAGGTGGACGGGTGCGAGCGGGACAGCAAGGCGGAcgtgctgagcgagggccgcaGCGAGGGCGACGCGCCCATGAACATCTGCGCCGACGAGTGCATGCCGCCGCGCGGCGAGCTCAGCGGCCAGGAGAGCAACGGAGACATGGAGTCGCCTTGGAGCGGGATGTACTCAGAGGTGACGGCGACGGAGCCCTACGACCTGATCGCGCGGGAGAGCTGGGTGTCTGACGGCTCGGAAGCGGACGCCAACGAGAAGAGGGAACCCATCGAGGAGGAGCTAGCATTACCCCTGCCGGCGGTGTTCGGGCGCGGACGCACGTGCGGCACGTGCGGCGTCACGTGCGCGTCCGTGCGCGAGCTGCGTGCTCATCGTGCCCGCGTGCACGCCGCCACCACCAAGACCTCCTACAGCCGCCTCGTTACCGCCAGGACTATCAAGAAGGAGGAGAAGCCTGATACCAACAATCTTCTACCACCAATCGACTCAAAGGACTCGATATCATCCACAATCCTTCAAGTGTACGAGAGCATACAAGTGGAAGAGGCCAAGCCTAAGATCGAAGTGGACAGACTTATCAAGCAGGAAGTGAAGCGGAGGCGCAAAGACTACGTGTGTCCTACGTGTAAGGAGGACCAGGTGACGGACGCGGCGTTCCACGCGCATCTCAAGATACATCCCCTCGAGTGTCTCACGTGTGGAAAGTGCTTCTTCAGGAGAGCAAACCTGGCATTACATATTAAGACACATTTAGGAATTAAGAATTATAAATGCGACGTGTGCGAGAAGCGGTTCGTGACGCGGCAGAAGCTGCTGGAGCACCACAACGTGCACACCGGCCGAGCGCCCGTCAAGTGCACCATGTGCGACGACACCTTCCGCCGCTACTCCAACATGGTGCAGCACAGGTACTGTCCAGCTCCATCCCTCCACCACACACCCACAGCTACCTGCCAGGCGTCAAGTGCACCATGTGCGACGACACCTTCCGCCGCTACTCCAACATGGTGCAGCACAGCCGAAATTAACTTCACCACCAAGTGGAACCTCAAGCTGCACCGCTGGACGCACATGAGTCGCTCCGCCAAGCCCTTCAAGTGCGGCCTGTGCAAGGGCGCCTTCATCCGCCACTCCGAGTACGTGTCGCACATGAACGCGCACAAGTCCGTGCGGCCCTACACCTGCAACTACTGCGGCTGCCAGTTCATCCGCAAGTACAACTGCCAGCGGCACGTGCGCGAGCACGAGATGGCCAAGAAGTACGTGTGCAAGGTGCCCGAGTGCGGTAAGTCCTTCCACAGGAGCTACTACCTCTCCGAGCACATGAAGGTGCACAGCGGCGCTCGCCCCTTCGCCTGCAACATCTGCGGTAAGACTTCCAGCAACAAGTCCAACCACAACAAGCACGTGAAGATACACCACGCGCGCGAGCCCGTCGCTACCGAAGCGTAA
- Protein Sequence
- MDQLVQCPVCTLFLHNGITLESHLDTHPKDQVIKALCNIASNKNSSFASRTSTPVHSERSYRSRSRTPATDDSTKWPGSRSTEHERYWRRTPSRTPKSTAPSRNGTPDIRMLDVNFENHGLPAAGAGQHVNNPFLLKADKLQQTFQSPAVPDFDPQFVYYPEQQEDREIKFSRSAEYNAMDNSNNLFSYNVPTMPGPGVKLLPAMPRKANDLVKVLPKPNNILLKANMGGVQYIGPGVKPMHVMVPSAPTFMQKNVQNNMIMTGSGASPQMHIDTKTASPPLASNQLNQMTSGAFTPGTTVVTQNSQIIYREMVHNIDGKPFITTMPTVLGGHENVSNLAQASSMYQNVMVVDQFGNTSCMYTTPQQMMNKGCPTSMYNEPGSLMPSVHIDKSVPTMNDPKTLIIEVGPLIAPGHDNICEDPSSSITQPVQSSSVDNTERPVEVLDSKFDMPGGTKGLKILSNIKVEVPVQHHKNMVNTVMDLTGSTEAEYSVERAESPEKILPDLDDNNQLSSDDTQPSSMSSGDSMVSHTFSVIKNVGNPSKSSVDKLDTDFSDSCPVPDLICNEKPSISPCSELSENGDNSTDRTSISPKPESNQVSLSNLGLPEKKNPLSQKPYRHNTLRLNNIFVKKHKKILQIKNAKSFPVKTKKSEHRDNVPTSSTCRSPENFSMNKLHQTDKSDSKEKTNLLQTISVEEIKENDDNNDFDDDIEEQSMDIEPVAASSLAQPEFAAGIEMIQVKEEINTSNEGGFSNEPVTTDRMLTPLETLRPINVINYGNMSNEDFNEESNDRELLDLEAASKNKQFVSMMNENYFGDNIYADYFTADRVEGFDAERDAAAFKEGGKDGMYLWGEPSQKDNEFVLPNFIHESYKIAESNGIDYSELGAREVQVDVEVDGCERDSKADVLSEGRSEGDAPMNICADECMPPRGELSGQESNGDMESPWSGMYSEVTATEPYDLIARESWVSDGSEADANEKREPIEEELALPLPAVFGRGRTCGTCGVTCASVRELRAHRARVHAATTKTSYSRLVTARTIKKEEKPDTNNLLPPIDSKDSISSTILQVYESIQVEEAKPKIEVDRLIKQEVKRRRKDYVCPTCKEDQVTDAAFHAHLKIHPLECLTCGKCFFRRANLALHIKTHLGIKNYKCDVCEKRFVTRQKLLEHHNVHTGRAPVKCTMCDDTFRRYSNMVQHRYCPAPSLHHTPTATCQASSAPCATTPSAATPTWCSTAEINFTTKWNLKLHRWTHMSRSAKPFKCGLCKGAFIRHSEYVSHMNAHKSVRPYTCNYCGCQFIRKYNCQRHVREHEMAKKYVCKVPECGKSFHRSYYLSEHMKVHSGARPFACNICGKTSSNKSNHNKHVKIHHAREPVATEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00908225;
- 90% Identity
- iTF_00783825;
- 80% Identity
- -