Hzea015086.1
Basic Information
- Insect
- Helicoverpa zea
- Gene Symbol
- -
- Assembly
- GCA_002150865.1
- Location
- KZ116986.1:275062-280478[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.34 24 5.7 2.2 2 20 192 210 191 210 0.94 2 11 3.3e-05 0.0023 18.3 1.3 3 23 268 288 266 288 0.96 3 11 8.1 5.7e+02 1.4 4.2 1 23 325 348 325 348 0.89 4 11 7.3 5.2e+02 1.5 5.1 3 23 356 376 355 376 0.95 5 11 4.6e-05 0.0032 17.9 2.8 2 23 382 403 381 403 0.96 6 11 4.9e-05 0.0035 17.8 4.0 3 23 411 432 409 432 0.94 7 11 0.001 0.074 13.6 0.6 2 21 438 457 437 458 0.95 8 11 0.0021 0.15 12.7 6.8 1 23 465 487 465 487 0.95 9 11 2.5e-06 0.00018 21.9 3.4 1 23 493 515 493 515 0.98 10 11 3.5e-06 0.00024 21.4 2.1 1 23 521 543 521 543 0.98 11 11 0.47 33 5.3 1.0 1 23 549 574 549 574 0.85
Sequence Information
- Coding Sequence
- ATGGTGTCTATTAAAGGTGGTTTGgatggaaatattaaaatacgtaCTTGTCGAATATGTCTCGATGCTAGTGCTGATGATATGGTGTTACTAAGTGATCATAATGGTTGGCTAAATAACTTCGAATATTGTTTTGGAATTACGCTAACCATTAAAGATGAACCTCGGTTACTGTGCAAACTGTGTGCTGATAGTGTTGAGAATTATGTTCAGTTTAAGAAGAAATGTGAAAAATCTCATATACTTTGGCAGTCTGTGATAAGTAATGTGcAATGCTACATTGTTAAACACAATACCTTAGAAAATGGGAACACATCCGTAGACAATGCTGTAAATAATCTCAATGGAAATGAACCGAATGTAATAACACAATCACTGTATACTGAAATTAAACTAGAAAGTGATGAAGAACGGAGTTATCATTCTGGAGATGAAACAAAACTGgaaaataatgaatgttttgataaaagaaaaatttctACAATAGATATAAAGGAATGTCTCGATACAAGAGGCTTGGACTTAAAACTAAAGAATTCTAAGGATGAGAacataaaaaaagttgaaataatCAAGTGTAAAAGATGCCATAGAAAATATAAAGGTAAAGCACGGTACCAAACCCACTTACCaagttgtaaattaaaaaaacgaaaaaaaaagcTAGTTGTTGATAATGATTATGCGTACAATTGTGGAAGAAACTTTAATTGTGATAATGATTCTAAGATAAAACTTGAATCcaataatgatgataatattaaagTATTCAGTGAAAATCAAATTGATGGGCAATGCTTATGtgGTCTCTGTGGACAAAGTTTTAGCACTCGCGCCTCTTTGAACCAACATTTGAACGAACATTGGTCAAGCAATAGTTTGTCATGTGGGTTATGTGATTTTGTTGGCATTGACTTGGCTGCTATTGCTTCGCATAGATATTCTCACTATCCGCGCACTGATGATATGCGTTTCATGTGCCATATATGCAGTTATCGGACTGTGTCGCTTTTGGCCTTACACTTTCACTACCGGTCTAAACATTTGAATAAGATTGGCGGTCACTGCACAAGATGTGACAAGGATTTCCTCATATTAAGGCATTGGAAAAGACATGAGCAAACTCATTTTACTACAAAGTGTATATGCGATTTTTGTGGGAAAACgttctATTCGAAATACTCGATGATGGAGCATCTCATGACCCACATGCGCCTGTTCAAGATTATTTGCCACATTTGTGGGAATCACTTCTGCCGAAAGAGCTACTTgaaagtGCATATAAAAGCAGTACACTCAACCGGGCCGGTGAAATGTAGCCACTGcggaaatatgtttaaaaacgAAATTGTTCTGAAAAAACATTTGAGACttataaaaatggaaaaaatattcgaaTGTACGTTCTGTAACAAAAAGTTCGTACATTTATGCCAATTAAAGAGCCACATGGTTTTTCATAGCGAAGAAAGACCTTATTGCTGTGAAATCTGTGGTTCcagATACAAATCAAACAGTCAACTAAAAGTGCATATGAGGAAACATACTGGTTTATTTCCATTCAAATGCACTCAGTGTACCAAAGCATTCGCAAGTTCGAATCAATTAAAAAGACACTACTCAGTCCATACGGGTGTACGCAGTCATCGCTGCGTTGTTCCGACTTGTGGACGAACGTTCCATGCTAGGAAACTAATGTTAGCGCACCTGGCGTTACGACATAAGGACCACGAGGGCTTAGATTTGCAAAAGTGA
- Protein Sequence
- MVSIKGGLDGNIKIRTCRICLDASADDMVLLSDHNGWLNNFEYCFGITLTIKDEPRLLCKLCADSVENYVQFKKKCEKSHILWQSVISNVQCYIVKHNTLENGNTSVDNAVNNLNGNEPNVITQSLYTEIKLESDEERSYHSGDETKLENNECFDKRKISTIDIKECLDTRGLDLKLKNSKDENIKKVEIIKCKRCHRKYKGKARYQTHLPSCKLKKRKKKLVVDNDYAYNCGRNFNCDNDSKIKLESNNDDNIKVFSENQIDGQCLCGLCGQSFSTRASLNQHLNEHWSSNSLSCGLCDFVGIDLAAIASHRYSHYPRTDDMRFMCHICSYRTVSLLALHFHYRSKHLNKIGGHCTRCDKDFLILRHWKRHEQTHFTTKCICDFCGKTFYSKYSMMEHLMTHMRLFKIICHICGNHFCRKSYLKVHIKAVHSTGPVKCSHCGNMFKNEIVLKKHLRLIKMEKIFECTFCNKKFVHLCQLKSHMVFHSEERPYCCEICGSRYKSNSQLKVHMRKHTGLFPFKCTQCTKAFASSNQLKRHYSVHTGVRSHRCVVPTCGRTFHARKLMLAHLALRHKDHEGLDLQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00783870;
- 90% Identity
- iTF_00783870;
- 80% Identity
- -