Basic Information

Insect: Helicoverpa zea
Gene Symbol: -
Assembly: GCA_002150865.1
Location: KZ117407.1:255106-259881[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 5.4e-06 0.00038 20.8 0.7 3 23 307 327 307 327 0.99

2 5 1.8e-05 0.0013 19.2 0.3 1 23 333 355 333 355 0.97

3 5 1.5e-06 0.00011 22.6 0.1 1 23 361 383 361 383 0.97

4 5 9.7e-05 0.0068 16.9 1.1 1 23 394 416 394 416 0.98

5 5 8.8e-05 0.0062 17.0 0.4 1 22 421 442 421 445 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	5.4e-06	0.00038	20.8	0.7	3	23	307	327	307	327	0.99
2	5	1.8e-05	0.0013	19.2	0.3	1	23	333	355	333	355	0.97
3	5	1.5e-06	0.00011	22.6	0.1	1	23	361	383	361	383	0.97
4	5	9.7e-05	0.0068	16.9	1.1	1	23	394	416	394	416	0.98
5	5	8.8e-05	0.0062	17.0	0.4	1	22	421	442	421	445	0.91

Sequence Information

Coding Sequence: ATGATGAGAACCTACACTCGCAAGCGTCCTAACCACCAGTTGATAGAGGATGTGCACGAGCTGTGCAGACTGTGCCTGAACAAGACCATGGAAGCCATGCCCATATTCTCAGAAGACTCGGACAATATCTGTGCAACACTGGCACTGAGGATCATGATCTGTGTGGGACTGGAGATGAAAAGAGATGAATACTTACCAAACATAATCTGTACAGACTGCTACGACCAACTCAACAAATATTATGCATTCAGGAAGAAGTGTGAGGTGACGTACCAAAAGTTGAAGTCTCACGTTCTAGCTGTAAAGGAAAAagaatacaaacataaaatcaaAGAAGAAGCAGATAATAAAATGAAGTTAGAACAAGTAGAGAATGAAGAAGAATTAAAGTATGTTGTCACATTCGATAAGGAGCAGTATCCAGATGTTAACGGTTTGAATCTGAATGGAGTAGCacaaatgaatcattttacTGAGAAATTACCAGAGCTTTCGAAAATTGAGTTGCTAGAAACTAAGGATAATGATCAAACAGAAGAAGAAGTGCCATCAGACCCTGACATAACAACATTCCTATCCACAATGCTTGTAGAGCTCGGCATACTGACACCCGGAGACAATGGACTGATCTACTCTAACCAGAATATAAAGTCATTAGAATTGGAGACCGGGGACGGTAGCAGTATTGTGATGGAACTGGTCGAGGAAGATGATGCACAGGAACAAATTGTGAGTGCAGAGAATCAAATAGAAGCAAGTAGCCTAACACAGATGACACAGGAACAAGTAACGGATCAGGTACAAGCTAACGATACTAAGAAAGTAGAAGACACATTCAAAGAAAATGAGTGTATCATAAAGTATGTTACGTCAAATGCTCAGATCAAGAAAGATAAACCAGACAAAAAGTGTGCGTGGTGCTCGGAGTGCGGGCGGCGCCTGGCCAGCCGCAGCGCGCTGACGCGGCACCTGCGCACGCACTCGGGCGAGCGGCCCTACGCCTGCCACGTCTGCGGGAGGACCTTCGCGCAGAAGGAGGTCATGGTCAGGCATCTGCTGGTGCATGGAGAGCAGCGTCCCTTCGCGTGCTCTGTGTGCGACAAGAGCTTCACGCAGCGCGGCGCCCTGGCGGCACACGCGCGGCAgcacgcgccgcccgccgcgcgaCCGCTCGCGCTGCACCGCTGCGACAGGTGTCCCAAAGTCTTCCTCTACGCATCTGGTCTGAGTCGTCACATGATGATGCACAACGGTCGCGTGTATGTGTGCGGCGCGTGTGAGCGACAGTTCAAAGACAAGAGCTCCCTGCTGCGCCATCTCAAGAACGCCAACCACGCGCCGCGAGCCTCCGCGCCTACCTGA
Protein Sequence: MMRTYTRKRPNHQLIEDVHELCRLCLNKTMEAMPIFSEDSDNICATLALRIMICVGLEMKRDEYLPNIICTDCYDQLNKYYAFRKKCEVTYQKLKSHVLAVKEKEYKHKIKEEADNKMKLEQVENEEELKYVVTFDKEQYPDVNGLNLNGVAQMNHFTEKLPELSKIELLETKDNDQTEEEVPSDPDITTFLSTMLVELGILTPGDNGLIYSNQNIKSLELETGDGSSIVMELVEEDDAQEQIVSAENQIEASSLTQMTQEQVTDQVQANDTKKVEDTFKENECIIKYVTSNAQIKKDKPDKKCAWCSECGRRLASRSALTRHLRTHSGERPYACHVCGRTFAQKEVMVRHLLVHGEQRPFACSVCDKSFTQRGALAAHARQHAPPAARPLALHRCDRCPKVFLYASGLSRHMMMHNGRVYVCGACERQFKDKSSLLRHLKNANHAPRASAPT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00783877; iTF_00785528; iTF_00786301;
90% Identity: iTF_00783877;
80% Identity: -