Basic Information

Insect: Helicoverpa zea
Gene Symbol: -
Assembly: GCA_002150865.1
Location: NFMG01001622.1:17724-20641[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00038 0.027 15.0 0.8 2 23 258 280 257 280 0.95

2 10 0.019 1.3 9.7 1.6 2 21 286 305 285 306 0.91

3 10 0.14 9.7 7.0 1.2 1 23 328 350 328 350 0.96

4 10 0.00011 0.0075 16.8 5.3 1 23 356 379 356 379 0.96

5 10 0.014 1 10.0 2.1 2 23 387 408 387 408 0.98

6 10 1.9e-06 0.00014 22.2 3.3 2 23 414 435 413 435 0.98

7 10 0.0049 0.34 11.5 5.5 1 23 441 464 441 464 0.98

8 10 0.0033 0.24 12.0 0.6 1 23 470 492 470 492 0.98

9 10 0.036 2.6 8.8 0.1 2 23 498 519 497 519 0.96

10 10 9.1e-06 0.00064 20.1 3.4 1 23 524 547 524 547 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00038	0.027	15.0	0.8	2	23	258	280	257	280	0.95
2	10	0.019	1.3	9.7	1.6	2	21	286	305	285	306	0.91
3	10	0.14	9.7	7.0	1.2	1	23	328	350	328	350	0.96
4	10	0.00011	0.0075	16.8	5.3	1	23	356	379	356	379	0.96
5	10	0.014	1	10.0	2.1	2	23	387	408	387	408	0.98
6	10	1.9e-06	0.00014	22.2	3.3	2	23	414	435	413	435	0.98
7	10	0.0049	0.34	11.5	5.5	1	23	441	464	441	464	0.98
8	10	0.0033	0.24	12.0	0.6	1	23	470	492	470	492	0.98
9	10	0.036	2.6	8.8	0.1	2	23	498	519	497	519	0.96
10	10	9.1e-06	0.00064	20.1	3.4	1	23	524	547	524	547	0.94

Sequence Information

Coding Sequence: atgagtgaGCAAAAGAAGAACATTAACTGTCGTGTTTGTTTGCGATATGATTTGAAAGGACAGAAATGTTTCTCCTTGTTCGAAAACTACAATAACTCTTTGATATTTGagaaaattaagtatgtagCCGACGTTCAAATAAGGGAGGGTGATGGCCTTCCTAGCACAATATGTCCAGACTGTTTATTGCAATTAGAAACAGCACTAgtgttcaaacaaaaatgtgaGACTTCAAACAAAATCTTGCTGAGTGTCCTCAAACAACCGTCTAAAATTTGCAAGGTAGCCTTCAGACCTGTTCCAGTTAAAAAAGAAGCAGAAATAGTATTGGGTAATGCAGCACAGGATCCCAGCCAAGGTCATAATCACATAGGTGCAATATCAAAAACACTTGAAAGATCAACAAATGTGGTAGCAGAAATTCCCACTGATGCACAGCCTGTCCATGAAGTACCTGTAACTTGTCAAACGAAGTTTTTAACTATTTCACCACTACCTCTCAAATGCGAAGAACTAAGACAACCCATCGACCAAGAATTTGAAACTGTTCATCTGAAACTTGAACAAAATACTCATGAAATACACAAGGAAGTCCCAGTAGCTGAACCATTTGAAAATGAAGGATCCATTGATGAACCATCTGACAGTGAACTGGTTATTGATACTGATAACAACGGAGGAATTGACAGCGAAGATCATGATGAACCTGATAATAAACAACAAGAGACTCAAGGAACAGTAAAAAAGAGTAAAGCTAGAGATCTTAAATTAATATGCGATGATTGCGGAGGAAGCTTCAAAAGTAAATGCAAGTTAGCCGTCCACTGGAAGAAAGTTCACCAACCCCAAAAGTTAATTTGTCCGCACTGCAAAAGAATCTTCAAATCTTTCAAAGCATACCATGTGCATGCCAAAAAGAATACAAGAAGCTGCTATGTTGCTACTCTCGTAAACATTGAAGGTTTGGGCAGCGATAGGATATATCACTGCAGGGACTGTGATTATAAAACTAGAAATATTAAGGACATAGATGCCCATTTGGTTACACACAGCGGAGACAGACGGTTTCAATGTAAAGATTGTTCTAAATGTTTCACACAGCATGCTTCACTGCAAGGGCATAGGGAATCACAGCATAATGACTTTAAAGTTGAAGCAACATGTCATTACTGTGGTCTATACATAAAAGGACGCAATAAACTATACAAGCACTTACGAATACATGAGCCGAAATCGGTTAAATGCGAAGTTTgtcaaaagatatttaaaagtCATTCGAATTTATCTAATCATATGAAGAGACACAATGGTGTTAGAGGCTACACGTGTGAACATTGTTCTGCAAACTTTTTCACCATGTCCGAGCTCTGTAACCATAGAAAAAAGGTGCATTATAAGtcgaaaacatttaaatgtGACTTGTGTGAATATTCTTTGTATACAGCTGTTACACTGAAACTGCACAGGGCAAAGCACACTCATAACAATGTAGTATGTTTACTGTGTGGCATGTTTTTGGAAAGTGCCGAGAAGTTAGCTCTTCACCAGAGAAATCACAATGAAAAGAACTTCGCCTGTCAACAATGTGATAAAAGCTTCCACCGTAGAGATTCACTGCGGAGACACATTTTACAGAAACATGGGCCCCCAAAAAGAGAAGAACCGGTGCACATGAAAGTTGTAAAGATCAAACAAGAGTTTTCCGCAGACCATAGGTTTGATAATGTCATTACATTGTCGCCTATTTTGTCATAA
Protein Sequence: MSEQKKNINCRVCLRYDLKGQKCFSLFENYNNSLIFEKIKYVADVQIREGDGLPSTICPDCLLQLETALVFKQKCETSNKILLSVLKQPSKICKVAFRPVPVKKEAEIVLGNAAQDPSQGHNHIGAISKTLERSTNVVAEIPTDAQPVHEVPVTCQTKFLTISPLPLKCEELRQPIDQEFETVHLKLEQNTHEIHKEVPVAEPFENEGSIDEPSDSELVIDTDNNGGIDSEDHDEPDNKQQETQGTVKKSKARDLKLICDDCGGSFKSKCKLAVHWKKVHQPQKLICPHCKRIFKSFKAYHVHAKKNTRSCYVATLVNIEGLGSDRIYHCRDCDYKTRNIKDIDAHLVTHSGDRRFQCKDCSKCFTQHASLQGHRESQHNDFKVEATCHYCGLYIKGRNKLYKHLRIHEPKSVKCEVCQKIFKSHSNLSNHMKRHNGVRGYTCEHCSANFFTMSELCNHRKKVHYKSKTFKCDLCEYSLYTAVTLKLHRAKHTHNNVVCLLCGMFLESAEKLALHQRNHNEKNFACQQCDKSFHRRDSLRRHILQKHGPPKREEPVHMKVVKIKQEFSADHRFDNVITLSPILS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00783868;
90% Identity: iTF_00784697; iTF_00783868;
80% Identity: iTF_00784697;