Hzea010144.1
Basic Information
- Insect
- Helicoverpa zea
- Gene Symbol
- -
- Assembly
- GCA_002150865.1
- Location
- KZ118293.1:26402-52802[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1 73 4.2 3.2 1 23 235 258 235 258 0.93 2 10 0.0044 0.31 11.7 0.3 3 23 285 306 283 306 0.94 3 10 0.029 2 9.1 2.6 2 23 329 351 328 351 0.93 4 10 0.00096 0.067 13.8 0.0 1 23 357 380 357 380 0.94 5 10 9e-05 0.0064 17.0 1.6 2 19 387 404 386 409 0.91 6 10 0.057 4 8.2 0.1 2 23 415 437 414 437 0.92 7 10 0.00032 0.023 15.2 1.7 1 23 444 467 444 467 0.96 8 10 0.00031 0.022 15.3 0.3 3 23 475 495 474 495 0.94 9 10 7.4e-06 0.00052 20.4 1.5 1 23 501 523 501 523 0.98 10 10 2.7e-06 0.00019 21.8 0.7 1 23 529 551 529 552 0.96
Sequence Information
- Coding Sequence
- ATGATGGAGTTTGACGAGATTGTGGTGAAGGAGAGCCCCGGGCTTTGCCGGTGCTGTCTCTCCGAAGGGTGCTACAAAGACTTGGGTACTGAGTACACTTGGATGAATGAAACGGAGGTTTACGCTGATATGCTGCTAGAATGTTTCGATATTAGTATTACTCAACACAACGATGGTCCAAATGGCCCTAACCGGCTTATTTGCGAAGTTTGCATCACCAGGCTCCGAGATGCGTGTAATTTCAAGAAACAAGTACTGGACTCGGAGAAGAAATTCATTGATATGATGGGAAGAGGAGAATTTAGGCCTAAGATGCTAATCTACCAGGCCCAGATGAAATGTGAAGACCCAGTGGAAGCACCCATTGAGGAAGCAGACATCGAATATTTAGAAGACGACATTGATTTTACTGACGTTCCAGAAGAATTAATCAAAGATGAAACGGAACCATCAGTGTCGGACATAACAGTCTCAACATTACCAGTGAAAGGCAAGCGGGGTCGACCCCGGAAGAACGCTGTCAAGCCGGAGAAGAGACAGAAGGTTGATGATAAGCCCAAGACTTCGAAGGCTGTTACTAAAGATTACGAAGATGCAGAAGACAGACTTTCAGAGCGCCAAAGGAAAGACGACCTCACTAAACTCATCACTATAGTTCTAGAAAATTCTACCATTCTACCATTTCGATGGGCGTCTAACAAATACATGTGTTTCTACTGTTGCTGTGCTTTCGTCGACAGCGTGAAGTTAAGAGAACATACTATTGAAGAACACAGAGATGCAAAATTAAGAAATGTTTTAAGAACTTTAGTAGGCAGTAGTCGGGTAAAGTTAGATACCTCggaaataatttgcaaaaagtGCGGCAAACAGTTCAACCTCTTCGAAGATTTTTTGACTCACGTGTCTATGGCTCatgatttcaaattcaatagGGATATTTCTAGCTgtattttcacatttaatttaTCAGATAACGGCATGTCTTGTCATGAATGTGGACAGGAATTTAGATTTTTCGGTCCTTTACTGAAACACGCgcataaatatcataataaatacaaaacttttcttTGCGAAATATGTGGACAAGGGTTCGTCGCCCAAGCCAATGTTACCAGTCACATAAAAAACGTACATTCCATTACAAACGGACAGAAATGTCAAAAATGTGATAAAGTATTCCGCAATCCTTATGCTTTACAAATACATTGTGATAGAATACATAAGATGGAGTTGTTAAAATGTCCTAAATGTCCAGAGATTTTAGCGtcaaaatacttgaaaaaacAACACTTAGCTTTAGTTCACGATGTTAAAAAACTACAATTCAACTGTGACCAGTGTACGAGAGTTTTCACAATGAAAAGTAGGTTAGTACAGCATCAGCTAAGAACTCATTTGAAGCAGAAAACTGTAGCGTGCGAGATCTGTGGTTTTAAAGTCTTTAACAACGATCTTTTAAAACGTCATATGGTCCGCCATGATGATTCCCGCCCTTTTGAGTGCGAAGTTTGTAGCAAGACATTTCAGAGGAAGAAAACTTTGGAAATTCATAAAAGAATACATACGAATGATAGAAGGTATGTATGTAAAGAGTGCGGGAGGGCGTTTGTTCAAGTTACTAGTTGGAAATTGCATATGAGAGTGCATCATAGCGGAGTTGAGAACTCTGTGTTCAGAGATTTTAGTTAg
- Protein Sequence
- MMEFDEIVVKESPGLCRCCLSEGCYKDLGTEYTWMNETEVYADMLLECFDISITQHNDGPNGPNRLICEVCITRLRDACNFKKQVLDSEKKFIDMMGRGEFRPKMLIYQAQMKCEDPVEAPIEEADIEYLEDDIDFTDVPEELIKDETEPSVSDITVSTLPVKGKRGRPRKNAVKPEKRQKVDDKPKTSKAVTKDYEDAEDRLSERQRKDDLTKLITIVLENSTILPFRWASNKYMCFYCCCAFVDSVKLREHTIEEHRDAKLRNVLRTLVGSSRVKLDTSEIICKKCGKQFNLFEDFLTHVSMAHDFKFNRDISSCIFTFNLSDNGMSCHECGQEFRFFGPLLKHAHKYHNKYKTFLCEICGQGFVAQANVTSHIKNVHSITNGQKCQKCDKVFRNPYALQIHCDRIHKMELLKCPKCPEILASKYLKKQHLALVHDVKKLQFNCDQCTRVFTMKSRLVQHQLRTHLKQKTVACEICGFKVFNNDLLKRHMVRHDDSRPFECEVCSKTFQRKKTLEIHKRIHTNDRRYVCKECGRAFVQVTSWKLHMRVHHSGVENSVFRDFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -