Hzea013483.1
Basic Information
- Insect
- Helicoverpa zea
- Gene Symbol
- -
- Assembly
- GCA_002150865.1
- Location
- KZ118666.1:285456-287840[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.074 5.2 7.8 0.6 2 23 211 233 210 233 0.95 2 10 0.0033 0.23 12.1 0.1 1 19 236 254 236 257 0.95 3 10 0.29 20 6.0 4.7 1 23 261 284 261 284 0.95 4 10 2.6e-07 1.8e-05 25.0 1.0 1 23 287 309 287 309 0.98 5 10 0.00014 0.01 16.3 0.4 2 21 314 333 313 334 0.93 6 10 0.00012 0.0086 16.6 0.8 1 23 353 376 353 376 0.92 7 10 7.1e-06 0.0005 20.5 2.1 1 23 382 404 382 404 0.97 8 10 7.7e-05 0.0054 17.2 1.5 1 23 410 432 410 432 0.99 9 10 0.0011 0.078 13.6 0.3 1 23 438 461 438 461 0.95 10 10 0.00029 0.02 15.4 3.2 2 23 467 488 466 489 0.94
Sequence Information
- Coding Sequence
- ATGATATTGGTTGgtagccgccattttgtttcaTGGCGACGCAACTCAACTGATCTACGTGGGAACTGTTGGAGGTTCTTGAACGAAAAATTTTTAAGCGCGCGGTCtactttgaattttaataagtttgttaTTATCAAACGGCTTGTTGTTGCCACTGTGACTTTCTTTGTGAAGATGCTACAAGAATCTGAATTAAATATTCTTGTATCTAACGTGTTGGCcgaaaatcggttcagccattgTCGATTATGTTTGACGGAAATTCAAGAACACTATGTACGTTTCCACGATTCTGTATCGGTGGACGCCACAAGTTTTGTAACGCTTTCCGAAGTTCTTACTAAAGTTTTGGGCGCAGaaATCTGCGATGAGATTGCTGGCATTGATGCAGTCTGTATGTCATGTGTTGATAAAGCACTTGAATCCATGAAATTCCTGCTACTATGtgaaaaatctaataatttaCTGGACAATGTCTTCAATAACCTTACAAACACACTTAGTGTTCATATTGATGCCACCAAACCTGACCATACTCTCTACATAGAAGTTGGTGAACACGAATCCCAACTAATTTTAGTTAACAATGAAGCTAAGAAGAAGAAAGCTGTACCTAAAGATATACTTAGCTGTTCTACATGCAATGAGCAGTATAAAGATATTTTGGAGTTGACTCTCCATAACAAAACAACTCATGGCACATACACTTGTGAGAAGTGCCATGAAACAGTAGATAGTGAAAGCGAACTTATTGCCCATGAAGATAGTCAACAGACCCACATGTGTGCAGAATGCAACACCTTCCGATGCACCGAGGAAAGCTTAAAACAACACCAGGATAAATACCACGGTCTGTTTGTGTGCAAAGACTGTGGCAAGTCTTTCAAAAATTTAGATAAACTACAAATCCatgaacaaaaacataaatccaAAAGTGAATGTCCTAAGTGTGGTAAAAGCTATAACACAAAAGGATTCTTTTTGAAACATGTGAAGTTGTGTCTGGAAGACCTTTTAGACCCACACCCAATAAGGAGCAATATTAAAAAGACCCACTTTTGTGACAAATGCGGTAAGGGCTACAGTACCCCTGGGGGGTTACGGGTACATAATAGATTTGTGCATGGTAATGCAAAGCCACATGtctgtaaatattgtaacaaacaGTTCACGGCACCAAGCTATCTGAAAGTTCACATGGTGAAGCATACTGGAGAAAAGAATTTCAAGTGTGATCTGTGTAGCAGACAGTTTGTCTCCAAGGAGGCATTATTGTACCACACTAGAAGACACATAGGAGACAAGCCATACAGCTGCACATTGTGTGATGAAAAGTTTGTCAACGCTTCAGCTAGGGCTGAACATATCAAATTTAAGCATGTTGGTCCAACCCTCATGTGTGAGATCTGTTCTCGTAAATTCTTTACCCCCAACTTCTTGAGGCAGCATATAAAGAAGCATCATGATCCTTCCAATAAGCTGTATGCTGGAAGGAGTCTGATACCACCCAATGTTCCAGCTGTAGAGAATATGAGAGTTAGATTCATTGATTAA
- Protein Sequence
- MILVGSRHFVSWRRNSTDLRGNCWRFLNEKFLSARSTLNFNKFVIIKRLVVATVTFFVKMLQESELNILVSNVLAENRFSHCRLCLTEIQEHYVRFHDSVSVDATSFVTLSEVLTKVLGAEICDEIAGIDAVCMSCVDKALESMKFLLLCEKSNNLLDNVFNNLTNTLSVHIDATKPDHTLYIEVGEHESQLILVNNEAKKKKAVPKDILSCSTCNEQYKDILELTLHNKTTHGTYTCEKCHETVDSESELIAHEDSQQTHMCAECNTFRCTEESLKQHQDKYHGLFVCKDCGKSFKNLDKLQIHEQKHKSKSECPKCGKSYNTKGFFLKHVKLCLEDLLDPHPIRSNIKKTHFCDKCGKGYSTPGGLRVHNRFVHGNAKPHVCKYCNKQFTAPSYLKVHMVKHTGEKNFKCDLCSRQFVSKEALLYHTRRHIGDKPYSCTLCDEKFVNASARAEHIKFKHVGPTLMCEICSRKFFTPNFLRQHIKKHHDPSNKLYAGRSLIPPNVPAVENMRVRFID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01425368;
- 90% Identity
- iTF_00783787;
- 80% Identity
- -