Hzea010049.1
Basic Information
- Insect
- Helicoverpa zea
- Gene Symbol
- -
- Assembly
- GCA_002150865.1
- Location
- KZ118827.1:339086-346466[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.026 1.9 9.2 0.1 5 23 341 359 340 359 0.96 2 12 0.014 1 10.0 0.2 3 23 367 387 365 387 0.94 3 12 0.55 39 5.1 0.5 2 23 395 416 394 416 0.91 4 12 8.4e-07 5.9e-05 23.4 0.7 2 23 422 443 422 443 0.98 5 12 0.0022 0.16 12.6 4.3 1 23 449 471 449 471 0.98 6 12 0.00014 0.0096 16.4 0.6 1 20 475 494 475 496 0.93 7 12 4.9e-05 0.0035 17.8 0.2 1 23 529 552 529 552 0.96 8 12 0.00067 0.048 14.2 0.1 3 23 561 581 560 581 0.99 9 12 1.5e-05 0.001 19.5 0.4 1 23 592 614 592 614 0.98 10 12 5.8e-05 0.0041 17.6 4.5 1 23 620 642 620 642 0.98 11 12 0.0021 0.15 12.6 0.3 3 23 650 670 648 670 0.98 12 12 4.7e-06 0.00033 21.0 0.7 1 23 676 699 676 699 0.96
Sequence Information
- Coding Sequence
- ATGGATACGTGGTCCGATCTTTGCCGCTGTTGTTTGTCTGCCAATTCTGAAGTGTCACTCCTAGATACTGAACAGAATGTAACTGAGAAATTCCTTGAAGTTACTACGATTGAGGTGAAAGAAGATGATGGTTTGCCACAGAAGCTGTGCTCGGACTGTTACTCAATCATGAACTCTGCATACCAATTTCGCAAACAGTGCATCAAAATGGACAATGAACTACGTCTACAGCTGAATGCTGTACTAGACATACCTAAAAGTGACAATCTCTCTAAGTATGACCATAGTGGTGATGATGAAGACATTGGAAATGATCCTGTTAAACAGCTTGAAGCTATTATCAAACAAGAACCTACTGATAGTGACGATGACTGCTATTATGTTTTAGTGATAGATGACCCCAAGGATAAAACAAAAGTCCAACCTACTGTAGTACCCATCAAAGAAGAACAATTTGATGATCCTGCAACTGAAGATactactacatacatacatgaacAAACTCAAAGTACACAGAGTCAGTTTGAAGATTCAATTGAGTCATTTCTTATGTCCAACACTAAAGTTCCTGCCAATGTACCCGCTACTATCCTAGAAAATGAGGAGGAAAGCCAAGAGAATGATGACTTGGATGGAGCTATGAATATTGACGAAACTGAGGACACAATGACTCACGAACAGAGCTTAGCACAAATAGAACAGGCACAAGAGAATGAAATAATAGAAACTATTTCTACAGACGTCATCAAAGATATTCCAAATTCGAAaaacttcatcaaaatattgACCACCACAGAGTCCGATGGCACTATACTCTTGAAAAGTAACGATTTTACACAATTAGTCACAAATGAAGAAGAAGACGGAGATGGTTTGTCCCAAGAGGTAATATTCTGTGAAGGTGATGACACCTCGCAATTCCAAATACTGAAGTATGATGGCTCAGAGCTGGTTATAGAGTATGCAGATGATGGTCAAATAGCAACTGTCCTACAACAAGAGGATGGGACATTCTTGTGTGATTGCGGAGAGCAATTTGAGGACCTGGCTGATTATGAGAAACATCAATACAAGCACAACCCTGCTGGTGAACATCTGTGCAGCTTATGCGGTAAAGGGTTTGAGTCTGCAGAGATACTGACGGGACACATGCTTCTTCACAGCAGTACAGGACTCCTCATCACTTGTCCGTTCTGCAACCAACTTATCAGACGCAATTCTTTGACGCAACATATCAAATATGGTCACAACAACTTTAAGCCTCGCTGCAACGTCTGTTTAAAAACATTTGCTAATCCAAACAACTTGAAGCGTCACATGATGATACACAGTGGCATCAGAGAGTTTGAGTGTGACATATGCTTCAAGAGATTCCACCAGAAAATTACTATGCAAACTCATAGACTAACACATATGAATCCGTTCTCTTGCAACCAGTGTGACAAAACATTTGAGACTAAGACTGCTTTGTCCGATCATAAAGAGTCCGAAGACTGTACGAGATCAAAAGTAATAAAGGTTAAAGAGGAATTAATGAAGACTGTGAAACAGGAAATAACTACAAATTTAGGGAAACTGCTTGGTTACGCTTGCTCATTATGTAAGAAGATGTTTTCTGTGGAGTCTGCTTTAGAGCAGCATATTGAGAGTACACACATAGTCGATCCAACGGAACTATTATGTTCCGAATGTGGTGAAGTGCTACCATCTAAGAAGGACATGCAAACACACATACTGACACACAAGAACTTGAAAGTAAAAAATGCAAAGAGGTTTGAATGCAATATTTGTGGTAAGGGGTGTTCCAGCCAGGCTATGTTGCTCATGCATGAACGGGTGCATACCAATGAGCGACCGTTCCCATGTCAGCTGTGCTCTTTACGTTTCAAGACGAAGACACATTTACGGACACATCAGCTGACTCACACAAGGGAAAAGAAGTTTGGATGTTCAGTTTGTATGAAGTTCTTTGCTCTAAAAGGTAACTTGGTGGTTCATTTACGTACACACACGGGTGAAAGACCATATGTCTGCTCCATTTGTGGTGAAGCTTTCATAGACtcgaaatatttgaaaaagcaTAAACTAAAGAAGCATGCTATAGACAATTTGCCCTGGAATCAGTACTAG
- Protein Sequence
- MDTWSDLCRCCLSANSEVSLLDTEQNVTEKFLEVTTIEVKEDDGLPQKLCSDCYSIMNSAYQFRKQCIKMDNELRLQLNAVLDIPKSDNLSKYDHSGDDEDIGNDPVKQLEAIIKQEPTDSDDDCYYVLVIDDPKDKTKVQPTVVPIKEEQFDDPATEDTTTYIHEQTQSTQSQFEDSIESFLMSNTKVPANVPATILENEEESQENDDLDGAMNIDETEDTMTHEQSLAQIEQAQENEIIETISTDVIKDIPNSKNFIKILTTTESDGTILLKSNDFTQLVTNEEEDGDGLSQEVIFCEGDDTSQFQILKYDGSELVIEYADDGQIATVLQQEDGTFLCDCGEQFEDLADYEKHQYKHNPAGEHLCSLCGKGFESAEILTGHMLLHSSTGLLITCPFCNQLIRRNSLTQHIKYGHNNFKPRCNVCLKTFANPNNLKRHMMIHSGIREFECDICFKRFHQKITMQTHRLTHMNPFSCNQCDKTFETKTALSDHKESEDCTRSKVIKVKEELMKTVKQEITTNLGKLLGYACSLCKKMFSVESALEQHIESTHIVDPTELLCSECGEVLPSKKDMQTHILTHKNLKVKNAKRFECNICGKGCSSQAMLLMHERVHTNERPFPCQLCSLRFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYVCSICGEAFIDSKYLKKHKLKKHAIDNLPWNQY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00039097;
- 90% Identity
- iTF_00783749; iTF_01285769;
- 80% Identity
- -