Basic Information

Insect: Helicoverpa zea
Gene Symbol: -
Assembly: GCA_002150865.1
Location: KZ118405.1:87584-91643[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.066 4.6 8.0 1.7 1 23 124 147 124 147 0.98

2 16 0.16 12 6.7 0.1 2 23 172 194 171 194 0.94

3 16 0.65 46 4.8 0.1 1 23 218 240 218 240 0.92

4 16 8e-05 0.0056 17.1 0.2 1 23 244 266 244 266 0.98

5 16 8.3e-05 0.0058 17.1 0.5 1 23 271 294 271 294 0.96

6 16 0.006 0.42 11.2 0.4 2 23 301 323 301 323 0.93

7 16 0.057 4 8.2 6.5 1 23 330 353 330 353 0.96

8 16 2.5e-05 0.0018 18.7 4.8 2 23 360 381 359 381 0.96

9 16 0.00011 0.008 16.7 1.7 1 23 387 409 387 409 0.98

10 16 0.049 3.5 8.4 0.9 1 23 554 576 554 576 0.96

11 16 0.0015 0.1 13.2 0.6 2 23 602 623 601 623 0.96

12 16 0.0073 0.51 11.0 0.3 1 23 645 667 645 667 0.98

13 16 1.5e-06 0.0001 22.6 0.6 1 23 671 693 671 693 0.98

14 16 0.00012 0.0085 16.6 0.3 1 23 698 721 698 721 0.95

15 16 3.9e-05 0.0028 18.1 0.5 2 23 728 750 728 750 0.97

16 16 4.9e-05 0.0035 17.8 1.1 1 23 757 780 757 780 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.066	4.6	8.0	1.7	1	23	124	147	124	147	0.98
2	16	0.16	12	6.7	0.1	2	23	172	194	171	194	0.94
3	16	0.65	46	4.8	0.1	1	23	218	240	218	240	0.92
4	16	8e-05	0.0056	17.1	0.2	1	23	244	266	244	266	0.98
5	16	8.3e-05	0.0058	17.1	0.5	1	23	271	294	271	294	0.96
6	16	0.006	0.42	11.2	0.4	2	23	301	323	301	323	0.93
7	16	0.057	4	8.2	6.5	1	23	330	353	330	353	0.96
8	16	2.5e-05	0.0018	18.7	4.8	2	23	360	381	359	381	0.96
9	16	0.00011	0.008	16.7	1.7	1	23	387	409	387	409	0.98
10	16	0.049	3.5	8.4	0.9	1	23	554	576	554	576	0.96
11	16	0.0015	0.1	13.2	0.6	2	23	602	623	601	623	0.96
12	16	0.0073	0.51	11.0	0.3	1	23	645	667	645	667	0.98
13	16	1.5e-06	0.0001	22.6	0.6	1	23	671	693	671	693	0.98
14	16	0.00012	0.0085	16.6	0.3	1	23	698	721	698	721	0.95
15	16	3.9e-05	0.0028	18.1	0.5	2	23	728	750	728	750	0.97
16	16	4.9e-05	0.0035	17.8	1.1	1	23	757	780	757	780	0.98

Sequence Information

Coding Sequence: ATGGGGTATGGATCCGACACGTCAAACTCCGAAACGAAGCGAAGAATCGTCCCGTTGTTCCAAGTAGCTTACGACAGGAGTTTATGTAGACCCCTTGGAACCTTAATAGACTTCGCTAGATTAAGACAAAAGACATTCAAAACTTTCTCAACGCCTCCAGCCAGAGATATTTCTCCGCCAGCAAGAGATATCTCTCTATCCCGCAGTCCTTCTCCCGTTTACTTAAATACTCCTTCGCCTTATGTGGAAACTACTGCTTTATCCATCCAAgctgttaaaacaaaagaaaagacgCCAGATATAAGACAGAACGCTCTAGCTGTGTTTGAATTCTCAACGGTCTACCCATTCGTATATGGAAGCAACAAATTCAAATGTTTCGTCTGCTCTCAACCGTTTTTGGATATAAACGAGTTAAAACTTCACATGCATACAACACATAATTTTGCGCCTCTCAAAAGACTAGTCAATAATAGAAGAGAAAATGTCTTAAAAATAGATGTAAGTGATATAACGTGTAAGATCTGTGCAGGGAAACTGCCTAACCTCGTTGAATTGAAACGACATCTCAAAGAAATTCATGGCAAGCCCATTGATTTGGAAGTACAGGACAATATGATACCCTTTAACCTCGAACCAGTTGATGATGGCTATAAATGTGTTGTTTGCGAACAAATATTCATCAAAGTTAGAATCTTAGTCATTCACATGAGCgaacattttaataactacaGCTGCGAGATCTGTGGTTCCGTTTTCATGACATTACGActtctaaaaaaacatttagaagTCCACGATTCCGGTAACTTTCCTTGTGACCGCTGTAACAAAGTTTTTAGCACCCCTTACAAACGGACTTTACATATCCGAGGGGTCCATTTAAAACAGTGTCCCAGACGATGTCCAATGTGCCCAGAGAAATTCAACTCGAACTATAAACGCACGATTCACTTACAAGATGTTCATAATCAGGAGACTAGGGTCCATAAATGTAAGACGTGCGGTCGGGGCTTTAATCTGAAGTACCATCTAGTTTGCCATGTGAGATCCGTTCATCTTCAGGAGAGGAACCAACAGTGTGACATCTGTCATCAGCGGTTTTGTAACAAGGAGTCCTTGAAAAGACATATGGTGATTCATACTGGGGAGAAGAATCATAAATGTGATGTCTGTGGGATGGCGTTTTTGAGGCGGAAGAATTTGAAAGATCATTTGCGTTTACATGATATTAgaaTCATCCAGAAATCAGATTCAACAATCACTCTGAAAGATGAAGATGGAAAAGATATAAAACTGACACTCCTAAAATATCCCATTTCTTTAGATTCATTAGAATACGAGCAAGATAACTCtaacaacaaaaactttaacagcaaactaaaaaagaaattaaataaagttaacttAAAGAAGGATAATGAGATAACAAACATGTCCATGCTGAAAGAACCAGTTTCTctcaacaatataaaatggaaAACCAATGAGGATGATCTAGAAAGTTCAGTCACAATAAACGTGAAGACTGTGCAAAGACATCTCTATGGAGCAACGAGGAAGCGAACTGAAAGCGTTGAGTATCTAACTTGGAAGCAGAATGCTCTAATCATCTTTGAATACTCTTACGTATACCCTTTTATTCACGCTAGTAAcaaatacaaatgttttataTGTGCCAAACCGTTTTTAGATGCTCATTTGTTAAAAGACCATTCAAATGAACATAATATCAAAGAAATGAAGAGAGAATTAAGCAATAGAGTGAGGGATAAGAATCTCAAAGTTGACGTTACATATCTACAATGCAAGATTTGTTTGCAAACGCTGACAAATCTGCAgaatttgaaaattcatttGAAGGAACATGGCAAGAAGATAGAGCCGAATTTGCAAGACAATATAATACCTTTCAAGTTAGGATCCGAGAATTTTGAATGCCAAATCTGTGGGGagaaatatctaaaattaagACTCCTTATAATCCATATGAGCAAACACTATAATAACTACAGCTGTGAAATTTGTGGTACCGTATTCATATCGCTGCATTTATTGAAAAGGCACCTTCAAATTCACGAATCAGGCAGCTTTCCTTGCGATAAATGTGACAAGGTTTTCAGTAATGCCGCCAAAAGGACATTGCATTATCGAGGAGTCCATCTCAAGCAGTTCCCGAGACGCTGTCCTATATGCCCTGAAAGATTTAACTCGAACTATCAAAGAACCAAACATTTACGTATAGTACATAACCAGACAACTGGACTTTATAGATGTGATACCTGTGGTAGAGAATATGACTTGAAATACCATTTGCTCATTCATATCAGATCTGTCCATCTTCAAGAGAGAAACCAAGAATGTCCTAATTGTGGGGATCATAATAATCTTGTTACTCATGTCAATAATGTTCATGGAGTGCTTTGA
Protein Sequence: MGYGSDTSNSETKRRIVPLFQVAYDRSLCRPLGTLIDFARLRQKTFKTFSTPPARDISPPARDISLSRSPSPVYLNTPSPYVETTALSIQAVKTKEKTPDIRQNALAVFEFSTVYPFVYGSNKFKCFVCSQPFLDINELKLHMHTTHNFAPLKRLVNNRRENVLKIDVSDITCKICAGKLPNLVELKRHLKEIHGKPIDLEVQDNMIPFNLEPVDDGYKCVVCEQIFIKVRILVIHMSEHFNNYSCEICGSVFMTLRLLKKHLEVHDSGNFPCDRCNKVFSTPYKRTLHIRGVHLKQCPRRCPMCPEKFNSNYKRTIHLQDVHNQETRVHKCKTCGRGFNLKYHLVCHVRSVHLQERNQQCDICHQRFCNKESLKRHMVIHTGEKNHKCDVCGMAFLRRKNLKDHLRLHDIRIIQKSDSTITLKDEDGKDIKLTLLKYPISLDSLEYEQDNSNNKNFNSKLKKKLNKVNLKKDNEITNMSMLKEPVSLNNIKWKTNEDDLESSVTINVKTVQRHLYGATRKRTESVEYLTWKQNALIIFEYSYVYPFIHASNKYKCFICAKPFLDAHLLKDHSNEHNIKEMKRELSNRVRDKNLKVDVTYLQCKICLQTLTNLQNLKIHLKEHGKKIEPNLQDNIIPFKLGSENFECQICGEKYLKLRLLIIHMSKHYNNYSCEICGTVFISLHLLKRHLQIHESGSFPCDKCDKVFSNAAKRTLHYRGVHLKQFPRRCPICPERFNSNYQRTKHLRIVHNQTTGLYRCDTCGREYDLKYHLLIHIRSVHLQERNQECPNCGDHNNLVTHVNNVHGVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01192954;
90% Identity: -
80% Identity: -