Basic Information

Insect: Helicoverpa zea
Gene Symbol: -
Assembly: GCA_002150865.1
Location: KZ118688.1:218937-225359[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 9.1e-05 0.0064 17.0 3.2 1 23 233 256 233 256 0.98

2 12 0.0021 0.15 12.7 1.8 1 23 263 285 263 285 0.94

3 12 0.00032 0.023 15.2 2.3 2 23 293 314 292 314 0.96

4 12 1.5e-06 0.00011 22.6 1.0 1 23 320 342 320 342 0.97

5 12 3.1e-06 0.00022 21.6 3.2 1 23 351 373 351 373 0.98

6 12 2.4e-06 0.00017 21.9 0.9 1 23 379 401 379 401 0.98

7 12 0.0017 0.12 13.0 7.4 1 23 407 429 407 429 0.98

8 12 1.6e-06 0.00011 22.5 1.7 1 23 435 457 435 457 0.99

9 12 3.9e-06 0.00028 21.3 0.8 1 23 463 485 463 485 0.98

10 12 1.8e-06 0.00013 22.3 0.4 1 23 491 512 491 512 0.98

11 12 5.7e-05 0.004 17.6 3.1 1 23 518 540 518 540 0.99

12 12 6e-05 0.0042 17.5 3.4 1 23 546 568 546 568 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	9.1e-05	0.0064	17.0	3.2	1	23	233	256	233	256	0.98
2	12	0.0021	0.15	12.7	1.8	1	23	263	285	263	285	0.94
3	12	0.00032	0.023	15.2	2.3	2	23	293	314	292	314	0.96
4	12	1.5e-06	0.00011	22.6	1.0	1	23	320	342	320	342	0.97
5	12	3.1e-06	0.00022	21.6	3.2	1	23	351	373	351	373	0.98
6	12	2.4e-06	0.00017	21.9	0.9	1	23	379	401	379	401	0.98
7	12	0.0017	0.12	13.0	7.4	1	23	407	429	407	429	0.98
8	12	1.6e-06	0.00011	22.5	1.7	1	23	435	457	435	457	0.99
9	12	3.9e-06	0.00028	21.3	0.8	1	23	463	485	463	485	0.98
10	12	1.8e-06	0.00013	22.3	0.4	1	23	491	512	491	512	0.98
11	12	5.7e-05	0.004	17.6	3.1	1	23	518	540	518	540	0.99
12	12	6e-05	0.0042	17.5	3.4	1	23	546	568	546	568	0.97

Sequence Information

Coding Sequence: ATGGATACGCAAAGTGCATTGGAAGACATCGGGAAAGGAAACGACGATGAACGTTTACCCAAGGAAGAATACATTGAGATAGAGATACCATACGATTTCTACCAATATCTTAGTTCGGAGCAGTGCAACATTCAGAACATGTGTCGAATATGTCTCGCTACAGACAACGAAGTGTTGTACCCTCTAGTTGCTaccaaagaaaacaatatacTAGCGCAAATGTTTACCGCGTTCACTTCATTGCAATTGTTCCCAGGAGATGGTTTGCCATCGAGCATCTGTGAGCCGTGTCAGGCTCAAGTGATGCACTGCTATGAGTTCAAGCTAAAGTGTGAGAAGTCCGACTGCATGCTCAAGTCCATACTCAAAGGAGAATTCATTGCCAAAGAGGAACTATCTGATCATAGCATGACTGTAAAGCAAGAATTagataaagaaaatatggaTAGAAATGATATCAATAACTTAGGCATAgatgataatgtatttttaaatgataatattgaagTTAAACAAGAACAAGAACTATTGGAAGATGTGCAATATTTAGAAGATCTCAGTGATAACAGTGATAACGTGACTATAGTACAAAATACCAGGAAGAAGAAGAGaaaaaaagttGCTGATGTTAATGGTGATTATAAAATTCACAGAAATGCTTCAGTAAGAAGTAAACATGGGAATAAAGGGAACTCATTCCGATGCAAGATTTGCTCTAaggtATTCCCCAATTTGAAAACATTCCACGCGCACGTTAGGAGCAAGCACCCAAGTAGTAAACATCAGCATATGTGCAACCAATGCACTGAATCTTTTGAGTCCGAACACGATCTTAAAGTGCATTCAGCTATTCACGTAAAACATGGAAATATTTGGAAATGTAACCAGTGCTCTAAGGAATTTAGTACGCGCACAATGATACGCCGGCACATATTCCGTCACATGGAGTCGAAACGTCACTCGTGCGATGTGTGCGGCAAGTCGTTCACGGAGCTGTACGCTCTGCGCAGGCACGAGCGCGTCCACACCGGTGAACTTGTGGAGAAGAAACACAAGTGTACTATGTGTGATAAACGGTACAGCAACAGCAGTCTACTAGCGACTCACATGTCGCGTCACATAGGGCTTCGCCCCTTCGAGTGTAGCGTCTGCGGGAAGCGGTTCACGACCAACCGACTGCTGTCTTCGCATCGACTCGTGCATTCTGAGAGCAAGCCCTATGCATGCCAGTATTGTGAAAAACGTTTCCGTCACGAGTCGACGCGCAACACGCACCACCGCACGCACACGGGCGAGAAGCCCTACGTGTGCGCCGTCTGCGGGAAGAGCTTCATACAGAACTCCAACCACACGCAGCACATGAGGACACATACCGGTGAACGCCCATACTCATGTTCGATATGCGATCGCAAGTTTTCATCAGGGTCTTCACTGAAGAGTCACGAGCGAATACATTCGGGAGAAAGACCATACAGCTGTGATGTTTGTGGGAAAGGGTTCACCCGCAAGAACTTAATAGCTCACATGCGCCAGCACACGGGTGAGCGTCCGTACGAGTGTAGTCTGTGCAACAAGAAGTTTCCGAATTCCACCAGACTCAGGGATCATCATAGAGTGCATACTGGTGAAAAGCCGTTTGAATGCACAATATGCCCTCAAAAATTCGCAACGAAATCTCAACTGTTGAAACATTGTAAAACCCACCAAAAGAAGAAGAGGCGAACTGAAACCCGTGGTCTAGTCATATTACAACAAGTTGAACCCGTTCCCATGGTTACCGATAGACTAATATTCAATAAGGACCATGGCCAATTAATTGCAGTCactgaaaatatagaaaacaagACGCTTGAAAACACACCCAAAGAACTGACTTTGAACATGGTGCAAGAAATGCCCTTAGAAGTTACAGAAGAATTGGTGTTACAAGATGATAGTAATATGAAGGGAAACCTTCTTGTAGTTGATAGTAGTCCCAATAACAACTATGAAGCTGGCAACATTTGTTTGAACACAAGCAATGTCAATATTATTGATGATGTTAACTATGATGGTGAAAATCTGGTAACACTGAATGGAGGCGGAGTCAGTATTTCTACGGCTAACCTCGAAGGTACTACAGTGAAACTGTACCAGTTAGACCAAAGTTTAGTACAAATACATAGTTCTGGTGGGCAAGTCACTATTAGTAAGATTAGTAGCAAAATGACTGCCaacttttag
Protein Sequence: MDTQSALEDIGKGNDDERLPKEEYIEIEIPYDFYQYLSSEQCNIQNMCRICLATDNEVLYPLVATKENNILAQMFTAFTSLQLFPGDGLPSSICEPCQAQVMHCYEFKLKCEKSDCMLKSILKGEFIAKEELSDHSMTVKQELDKENMDRNDINNLGIDDNVFLNDNIEVKQEQELLEDVQYLEDLSDNSDNVTIVQNTRKKKRKKVADVNGDYKIHRNASVRSKHGNKGNSFRCKICSKVFPNLKTFHAHVRSKHPSSKHQHMCNQCTESFESEHDLKVHSAIHVKHGNIWKCNQCSKEFSTRTMIRRHIFRHMESKRHSCDVCGKSFTELYALRRHERVHTGELVEKKHKCTMCDKRYSNSSLLATHMSRHIGLRPFECSVCGKRFTTNRLLSSHRLVHSESKPYACQYCEKRFRHESTRNTHHRTHTGEKPYVCAVCGKSFIQNSNHTQHMRTHTGERPYSCSICDRKFSSGSSLKSHERIHSGERPYSCDVCGKGFTRKNLIAHMRQHTGERPYECSLCNKKFPNSTRLRDHHRVHTGEKPFECTICPQKFATKSQLLKHCKTHQKKKRRTETRGLVILQQVEPVPMVTDRLIFNKDHGQLIAVTENIENKTLENTPKELTLNMVQEMPLEVTEELVLQDDSNMKGNLLVVDSSPNNNYEAGNICLNTSNVNIIDDVNYDGENLVTLNGGGVSISTANLEGTTVKLYQLDQSLVQIHSSGGQVTISKISSKMTANF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00785395;
90% Identity: iTF_00783739;
80% Identity: -