Hzea004463.1
Basic Information
- Insect
- Helicoverpa zea
- Gene Symbol
- -
- Assembly
- GCA_002150865.1
- Location
- KZ117060.1:2707-4180[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.9 6e+03 -2.9 0.0 12 22 77 87 73 87 0.84 2 2 5.3e-09 3.6e-06 26.7 0.0 5 35 110 140 107 148 0.90
Sequence Information
- Coding Sequence
- ATGTCTCAGGACGTGGCGGAATTTGTTAAGAAATGTGACAAATGTCAGAAGCAAAAGCATTCGTTACGGACTAAACAACCCATGGTTGTTACTACGACTGCGCAATCGgcttttgacaaaatattttttttagatgtAGTGGGGCCCTTAGATAAGGATTATTCTGACTACTCTTATATACTCACATTGCAATGTgaattaagtaagtatgtagAGGCATATCCATTAGTGAGAAAAGATAGTGTAAGTGTGGCTAGAGCGTTCGTCAACAATTTCATATTAAGcaaaaaaaaaatatcgtatacTGCATATCATGATCAGCAAATGATGGACTTAGCTCTCGAGATGATGAGAAACAAGGAGCTCTCGTCTTACAAAGCCGAATCATTGTACGGTATACCTCGACGAACATTGCTGGACGCACTCCATCAAAAACATCAGAAAGCTGTAGGTTGTTCTACACGACTCACGTCAGAGGAGGAAGAGGCTATAACTAACTATAGAggatataaaagtaaatag
- Protein Sequence
- MSQDVAEFVKKCDKCQKQKHSLRTKQPMVVTTTAQSAFDKIFFLDVVGPLDKDYSDYSYILTLQCELSKYVEAYPLVRKDSVSVARAFVNNFILSKKKISYTAYHDQQMMDLALEMMRNKELSSYKAESLYGIPRRTLLDALHQKHQKAVGCSTRLTSEEEEAITNYRGYKSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -