Hzea009737.1
Basic Information
- Insect
- Helicoverpa zea
- Gene Symbol
- -
- Assembly
- GCA_002150865.1
- Location
- KZ116730.1:7135-7710[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.9e-11 6e-08 32.4 0.0 1 44 14 57 14 58 0.92 2 3 2.2 1.5e+03 -0.9 0.0 15 23 127 134 125 138 0.81 3 3 0.96 6.5e+02 0.2 0.0 6 17 133 143 130 144 0.84
Sequence Information
- Coding Sequence
- ATGCCtcgtacttatttaaaaaagaaaaataagacaTACACTCCTCAAGATCTAGCCTCTGCACTACAGCAGGTAAGAAACGGGGAGCTTACCGCATATGCTGCTGCACAGAAGTACAAGATCCCTATGACCACTCTTCATGACCATGTCAAAACTAAAGATACTAGGCAGAATGCAGGTAGACCCATTGTTCTACCTTTAGAAGACGAAAAAAAGTTAGCAAGCACCATCATAGTCATGGAGAAATGGGGATTTGGGCTCTCAAGATCAGAGATTTTGGAGATTGTGGCTGAATATGTGCGCGTAAATAATATTCAGACACCATTTAAGAATAACACACCTGGACCAGATTGGTTTATTAACTTCCGAAAACGTCACGgtttgtcaataaaaaaagcACAAGCTGTAGAATATGTGCGACGTAAAATGACAGACCCATTCGTGATTgctgaatattttgatttgctGAAGAAGACCTTGCATGATTTAAATCTTTTAGAAAATCCAGACTCGATTTGGAACTTGGACGAGACGTCATTGTGTCTGGATCCGACCAAAACAAAAGTGGtcggataa
- Protein Sequence
- MPRTYLKKKNKTYTPQDLASALQQVRNGELTAYAAAQKYKIPMTTLHDHVKTKDTRQNAGRPIVLPLEDEKKLASTIIVMEKWGFGLSRSEILEIVAEYVRVNNIQTPFKNNTPGPDWFINFRKRHGLSIKKAQAVEYVRRKMTDPFVIAEYFDLLKKTLHDLNLLENPDSIWNLDETSLCLDPTKTKVVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00783370; iTF_01264409;
- 90% Identity
- iTF_00783370; iTF_01264409;
- 80% Identity
- -