Hzea004095.1
Basic Information
- Insect
- Helicoverpa zea
- Gene Symbol
- -
- Assembly
- GCA_002150865.1
- Location
- KZ118114.1:64053-73150[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.5e-13 4.4e-10 39.2 0.0 4 39 102 138 99 142 0.90 2 4 2.8e-11 1.9e-08 34.0 0.3 2 39 154 191 153 195 0.92 3 4 2.3e-15 1.6e-12 47.0 0.1 2 45 209 253 208 253 0.96 4 4 1.7e-18 1.2e-15 57.0 0.0 1 42 260 302 260 304 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCTACGGACTGTCTCAAGTGAAATGCGAACCGCTCTCGGACGAAGAAGACAGCGACTCACAATTCGCGCACAGTTATCTATCCAGTCAGAGCACATCACTGCTGGATCGTCACATGGAATTCATGAACGTCAGCGAAGTTCCCGACTCCACTGACTTCATGCCGCTACTGGCTGTCAAGGATGAACCGTCTTCAGAAGGTGAGCAACCGCACCTCAGTGGCGAAGACACGAGCGACTCATGCGGGAGACAAGCCTCGCCCGCGCCCCGACACAGCCCAAAGAGCTGGACGCAGCATGACATGGAACGAGCTCTCGAAGCCCTCAGAACACACCAGATGAGCCTCACTAAGGCATCATCAACATACGGCATTCCGTCGACGACGCTGTGGCAGCGCGCGCACCGACTCGGCATCGACACGCCGAAGAAGGAAGGCGCCGCCAAGTCATGGAGCGAGGCAGACCTGCGCGGAGCCCTGCATGCCCTCAGAGCCGGTGCCATCTCCGCTAATAAAGCCAGTAAGGCGTATGGTATTCCCAGCAGCACATTGTATAAGATAGCGCGTCGCGAGGGCATCCGTCTGTCGGCGCCCTTCAACGCGGCGCCAACCGCCTGGCGCCGCGCCGACCTGCAGCTCGCGCTCGCCGCCATCCGCGCCGGCAGCAGCTCCGTGCAGCGAGCCGCCACCACATACGGCATACCCACTGGAACCCTGTATGGGCGGTGTAAGAGGGAAGGCATCGAGCTGTCCCGCTCCAACCCCACGCCATGGTCTGAAGATGCCATGGGAGAAGCGCTCGAGGCAGTACGTGTGGGCCAGATGTCTATCAACCAGGCGGCCATTCACTACAACCTGCCTTACTCCTCACTCTACGGCAGATTCAAGCGCTGCAAGTATCAGATGCAGGGTATCCCTCAAACCCAGCAACCCCAACAAGAGCTTCAAAACCTGGAATCAGAACAACCTCACGAAGTGCCACAATACTACCACCAGCTACCACCTCACCAGGAACCAGAcccacacacatacacacacatgcaCGACTACACCCACACTCACGAACAGTACGGACAGTACTACCAGGGCTTCAACAGTATCGCCACCAGCTGA
- Protein Sequence
- MPGYGLSQVKCEPLSDEEDSDSQFAHSYLSSQSTSLLDRHMEFMNVSEVPDSTDFMPLLAVKDEPSSEGEQPHLSGEDTSDSCGRQASPAPRHSPKSWTQHDMERALEALRTHQMSLTKASSTYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQLALAAIRAGSSSVQRAATTYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQGIPQTQQPQQELQNLESEQPHEVPQYYHQLPPHQEPDPHTYTHMHDYTHTHEQYGQYYQGFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00425295;
- 90% Identity
- iTF_00783347;
- 80% Identity
- -