Hass016368.1
Basic Information
- Insect
- Helicoverpa assulta
- Gene Symbol
- stc
- Assembly
- GCA_029618815.1
- Location
- CAWLCW010000017.1:11815768-11819669[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.00012 1.9 9.4 9.6 10 18 38 46 35 47 0.92 2 3 2.5e-08 0.00041 21.1 14.9 1 17 83 101 83 107 0.84 3 3 0.0034 56 4.7 8.8 1 12 113 123 113 136 0.77
Sequence Information
- Coding Sequence
- ATGAGGTACGGCTTATGTAGCACCCGCCGCACCACTCGTGCCACTCCGGCGACTGTCCGCCCTGTGTCGTGCTCACTACCAAGCGCTGCCACGCACCCGCCGCACCACTCGTGCCACTCCGGCGACTGTCCGCCCTGTGTCGTGCTCACTACCAAGCGCTGCCACGGTGACCATGAGGAACGCAAAACAATACCATGTTCTCAAGAAGAGTTCTCGTGTGGGTTGCCTTGCGGTAAGCCGCTCCCGTGCGGCAAACACACCTGCATCAAGACCTGTCATAAAGGACCTTGTGATACTGGCAGGTGCACTCAACCTTGCATGGAGAAGCGTCCCAGCTGCGGTCACCCGTGCGCAGCACCGTGCCACGTGGCGGCCGGCACCGCCTGCCCCAGCACGGCGCCGTGCCGCCGCCCCGTGCGGGCCACCTGCCCCTGTAACCGCAGGCACGCTGAGCGAGCTTGCGCAGACAATGCACGGGATTTAGCCAAAATGATGAGTGCTTTAGCAGCCACAAAGATGTCGGAAGGCGGATCAGTAGACCTATCAGACGTCCAGCGCCCCGGTAATATGCTTAAAACTCTAGAATGTGACGACGAATGCCGCGTCGAAGCCCGAACCCGCCAACTGGCACTAGCCCTTCAGATACGCAACCCCGACGTGTCGGCGAAGCTGGCGCCGCGGTACAGCGAGCACGTGCGGGCTACGGCTGCAAGGGAACCCGCCTTCGCTAACCAGATACATGATAAACTTACTGAGCTCGTGCAGCTTGCTAAGAAGTCGAAACAGAAGACTCGAGCGCACTCGTTCCCATCAATGAACTGGCAGAAGCGTCAGTTCATACACGAGCTGTGTGAGCACTTCGGTTGTGAGAGCGTCGCCTACGATGCCGAGCCCAATAGGAACGTTGTAGCCACTGCTGATAGAGAGAAGTCGTGGCTGCCAGCAATGAGTGTGTTAGAGGTGCTGGCACGAGAGGCCGGCAAGCGCCGCGTGCCCGGCCCCGTGCtgcgcgcgccgcccgccgcctcgcccgctgcgcccgcgcccgcgcactCCACGCAGCACGCAGTCACCAAATCAACAGGCGGTTGGGCGACACTAACGTCCACGAACGCTTGGGCGGCCCGCAGCCAGCCGAAGACACAGCCGGCAGCCGCGCCACCCACCGAGAAGATCGACTACTTCGACAACCCGCCTGACAACTAG
- Protein Sequence
- MRYGLCSTRRTTRATPATVRPVSCSLPSAATHPPHHSCHSGDCPPCVVLTTKRCHGDHEERKTIPCSQEEFSCGLPCGKPLPCGKHTCIKTCHKGPCDTGRCTQPCMEKRPSCGHPCAAPCHVAAGTACPSTAPCRRPVRATCPCNRRHAERACADNARDLAKMMSALAATKMSEGGSVDLSDVQRPGNMLKTLECDDECRVEARTRQLALALQIRNPDVSAKLAPRYSEHVRATAAREPAFANQIHDKLTELVQLAKKSKQKTRAHSFPSMNWQKRQFIHELCEHFGCESVAYDAEPNRNVVATADREKSWLPAMSVLEVLAREAGKRRVPGPVLRAPPAASPAAPAPAHSTQHAVTKSTGGWATLTSTNAWAARSQPKTQPAAAPPTEKIDYFDNPPDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -