Hass019678.1
Basic Information
- Insect
- Helicoverpa assulta
- Gene Symbol
- -
- Assembly
- GCA_029618815.1
- Location
- CAWLCW010000021.1:8556576-8559367[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.06 5.3 8.5 0.3 1 23 244 267 244 267 0.94 2 17 3.9e-05 0.0035 18.6 2.1 1 23 272 294 272 294 0.98 3 17 0.00044 0.039 15.2 0.8 1 23 324 347 324 347 0.96 4 17 0.0051 0.45 11.9 0.4 2 23 408 430 407 430 0.95 5 17 0.00048 0.042 15.1 1.0 1 23 436 459 436 459 0.93 6 17 0.00035 0.031 15.6 0.5 2 21 463 482 462 483 0.93 7 17 0.022 1.9 9.9 0.2 1 23 491 514 491 514 0.94 8 17 0.039 3.5 9.1 0.1 2 23 555 576 554 576 0.95 9 17 3.3 2.9e+02 3.1 2.4 1 23 582 604 582 604 0.97 10 17 4.1 3.6e+02 2.8 0.2 2 9 610 617 609 626 0.86 11 17 0.0033 0.29 12.5 1.8 1 23 640 662 640 662 0.96 12 17 0.021 1.9 10.0 0.2 3 23 668 688 667 688 0.93 13 17 0.0063 0.55 11.6 2.4 2 23 703 725 702 725 0.96 14 17 0.0018 0.16 13.3 3.2 1 23 731 753 731 753 0.98 15 17 0.0012 0.1 13.9 6.0 2 23 760 781 759 781 0.96 16 17 0.00011 0.01 17.1 1.6 1 23 787 810 787 810 0.96 17 17 2.2 2e+02 3.6 1.5 3 23 817 838 815 838 0.94
Sequence Information
- Coding Sequence
- ATGGAGGAAGCAGTGAAACCTAGCAATCCTGACAATGTAGATTGGATCAAACACAAACTGCAGACGTTATGGACTTCACCGCAGTTCTGCGGGCTGTGCCTGGAGAACAAGGGGAACTTCTGTTCCGTTGACATGGAGTTTGTTATTAGCCAGCAGAAGCTGTCTAAATGTTTACaagatattttaaattatatttttaatgaagacACTGAATTCCTGATGTCAAGTCAGTACCTATGTGACAGTTGCACAGAAAAAACAATACAAGCCTACCTCTTCATCCACAATACAAAACAGCTTACAAGAATCCTCAACAACTGCGTCTCGGATATTTACTCCAAAGTAGTTGATGTGGATTCTCAACTTGACACCACTATCACATATGAAACAGCCAATGTCATGATTGTCCTTGAAAATGACACAGATTTATAcaaaactattaacaatatgaACTCCATGACTGAAATAGTTGTTACTGAAAAACCTGTACCAATGAAAGCATTTAAAACGGAGAAAGAAGAGCTGAAACCTAAAATCAGTCAGGTTTGTAGCATTGAGAAGCCGaaagaaataacaaaagaaGAACCAAAAGTGAACATGGTagtgaaagaaataaaagaaaagagAATTGAGAAACCTGATGGGACTCCAAATATAACCTTGAAAGAAGGTCACATTGTAATAAAACCTCTGAGCTCATTAAGAAATTCTACTCCTCGGTACAACACTTATGAATGCGCTGAGTGCCCAgacatatttacaaattttaGAACACTAAAGGAACATGAAAAAGCTAAGCATAAGAAAACAGTGTTCAGATGCAAGTTGTGTGACAAATCTTATAATACCTTGCAGTATTTAAACATACATTACTTGACACATTCTAAAGCGAGGTGCAAGTTATGTCTACTCATTCTTCCGGAAGAAGAACTAATGGATCACTTGAGGTGTAATCATGCAAATTTGGTATACCCCTGCAATTTTTGCGACTTGGTCTACTACACCCAAGAATCATTGACTACACATTTCAAAATAAGTCATCTAGTTAACGATACTAAAGCTAAGTCTCATTGTGTGATGTGCTTAACCAACTTCGTGGAAGATAAGAACAAGAAACATAAGTGCAAGTTCTCTTGCTCAGAATGCTTTGTGATGCCTTGCATACATTATAAGTACCTCATGTCTTACAGAGAGCAAGTGTTGAATCACGTAAGTTACATAAAATGCGTAGACTGTGATTATGGTACTCGTAGAAAAGAGCACTTAATAGGACATGCAAACAGGGAACATTTAGATCACCATCCATTCACCTGTGCTGATTGCGGACAACAGTTTTACACTAAATTGAGTCTTAAGACTCACATAGTACAGTTCCATTCAGATCTGTCCTGCCAATATTGTGATTTTGTCTTCAAGGATGCTAAAACTCTAGAGAATCATAGGAAATCTTGCAAGGTTGTCATACGGCCGTTCTCTTGCAGTCAGTGTGTTGCATCCTTTGATGTTTCTGAAGAACTGACCAACCATGAGAATTTAAGGCATAATGAAGGAGTACACGCTTGCACTCTCTGCAAGAGCAGATTCCTTACTGAAATAGAACTTCAGGAACACCATGCAAAAACTCATGGTGGTATTCAATGTAAGAAAAGGAGAAAGCATATTGAATGCTCCCTATGTGATATCATGTTTAAAAACGTAAAAGAAATGCTTGAACATGAGAAATTGCATCCTGAAAATGAAGTTTACCCATGCAAGGCTTGTGCAAAAAAGTGTAACTCCTTAATGAAACTGTATATTCATAATCAAAGGCACTATACTAAGAGAATTAAGTGCACTCAATGTGGTAAGAAGGTTGCTGCATCGTTCTATGCACAACACACTGTAAGGTGCCCTTACAAAAAGGACGCTGTTCTGAGTCATGTCTGCGAGGTATGTGGAAAGTCATTCCACTTGGAGTCATTACTGATCTTCCATCAAAGAATTCACAAGGATCCTGAACCCTGCCTTCTATGTGACAAGACCATCAAACCGTCAAGTCTGAAACGGCATATGGAACAAATTCATGGATTCAGTGCAAAAGCAAAGGCCAAACCTGGCCAGGCTATTGAATGTGAGTTATGCGGGCACATCGTTAAAAAGAAATGTGATTTGGAAACACATATGAACAGATACCATTTAAAAATCAAGCCATTTGTCTGTCACATTTGTAGCAAAGATTTTTGTGGAAAAGTACGCTTGAAGGAGCATTTAGCAACGCACACATCTGACAAAAGCTGCTTCTGTTCTATCTGTGGTAAAAAGTTTGCAAACCGTGTATGTCTGAAAATGCACTTTAGAATGCATACGGGAGTAACTCCATACGCTTGTGATCTTTGCGGTCAGAAGTTCAGATCTTCAAGTTTAATGAAGACCCATAGACTTAAGAAACATTTAGAGAAAACTGTAAACTGTCCTCTCTGTGATAGTATGTTCTTTATGGTCAGAGATATGAGGCATCACTTCAAAAAGGTTCATTGGAAAGGCAAAGATGGGGTGCCGTTTAATCCTGCAGATGTAAAAGAGTTATCCAAGGAGCATTACCATTTGTTTGAAGATCGCAGGTTGCCTAAACTTACTTGA
- Protein Sequence
- MEEAVKPSNPDNVDWIKHKLQTLWTSPQFCGLCLENKGNFCSVDMEFVISQQKLSKCLQDILNYIFNEDTEFLMSSQYLCDSCTEKTIQAYLFIHNTKQLTRILNNCVSDIYSKVVDVDSQLDTTITYETANVMIVLENDTDLYKTINNMNSMTEIVVTEKPVPMKAFKTEKEELKPKISQVCSIEKPKEITKEEPKVNMVVKEIKEKRIEKPDGTPNITLKEGHIVIKPLSSLRNSTPRYNTYECAECPDIFTNFRTLKEHEKAKHKKTVFRCKLCDKSYNTLQYLNIHYLTHSKARCKLCLLILPEEELMDHLRCNHANLVYPCNFCDLVYYTQESLTTHFKISHLVNDTKAKSHCVMCLTNFVEDKNKKHKCKFSCSECFVMPCIHYKYLMSYREQVLNHVSYIKCVDCDYGTRRKEHLIGHANREHLDHHPFTCADCGQQFYTKLSLKTHIVQFHSDLSCQYCDFVFKDAKTLENHRKSCKVVIRPFSCSQCVASFDVSEELTNHENLRHNEGVHACTLCKSRFLTEIELQEHHAKTHGGIQCKKRRKHIECSLCDIMFKNVKEMLEHEKLHPENEVYPCKACAKKCNSLMKLYIHNQRHYTKRIKCTQCGKKVAASFYAQHTVRCPYKKDAVLSHVCEVCGKSFHLESLLIFHQRIHKDPEPCLLCDKTIKPSSLKRHMEQIHGFSAKAKAKPGQAIECELCGHIVKKKCDLETHMNRYHLKIKPFVCHICSKDFCGKVRLKEHLATHTSDKSCFCSICGKKFANRVCLKMHFRMHTGVTPYACDLCGQKFRSSSLMKTHRLKKHLEKTVNCPLCDSMFFMVRDMRHHFKKVHWKGKDGVPFNPADVKELSKEHYHLFEDRRLPKLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00786297;
- 90% Identity
- iTF_00784678; iTF_00785474; iTF_00786297;
- 80% Identity
- -