Basic Information

Insect: Helicoverpa assulta
Gene Symbol: -
Assembly: GCA_029618815.1
Location: CAWLCW010000026.1:11533089-11541143[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00022 0.019 16.2 1.1 1 23 319 341 319 341 0.99

2 11 0.038 3.4 9.1 8.3 1 23 348 371 348 371 0.96

3 11 2.5e-05 0.0022 19.1 1.0 1 23 402 425 402 425 0.98

4 11 0.0039 0.34 12.3 0.6 2 23 434 456 433 456 0.94

5 11 0.044 3.9 9.0 0.0 2 20 467 485 467 487 0.94

6 11 1.9e-05 0.0017 19.5 0.4 3 23 497 517 497 517 0.99

7 11 0.24 22 6.6 0.2 3 23 533 554 532 554 0.95

8 11 4.8e-05 0.0042 18.3 4.9 1 23 571 593 571 593 0.98

9 11 9.1e-05 0.008 17.4 0.0 1 23 599 621 599 621 0.98

10 11 2.8e-05 0.0024 19.0 6.1 1 23 627 649 627 649 0.98

11 11 0.0055 0.48 11.8 5.4 1 23 655 678 655 678 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00022	0.019	16.2	1.1	1	23	319	341	319	341	0.99
2	11	0.038	3.4	9.1	8.3	1	23	348	371	348	371	0.96
3	11	2.5e-05	0.0022	19.1	1.0	1	23	402	425	402	425	0.98
4	11	0.0039	0.34	12.3	0.6	2	23	434	456	433	456	0.94
5	11	0.044	3.9	9.0	0.0	2	20	467	485	467	487	0.94
6	11	1.9e-05	0.0017	19.5	0.4	3	23	497	517	497	517	0.99
7	11	0.24	22	6.6	0.2	3	23	533	554	532	554	0.95
8	11	4.8e-05	0.0042	18.3	4.9	1	23	571	593	571	593	0.98
9	11	9.1e-05	0.008	17.4	0.0	1	23	599	621	599	621	0.98
10	11	2.8e-05	0.0024	19.0	6.1	1	23	627	649	627	649	0.98
11	11	0.0055	0.48	11.8	5.4	1	23	655	678	655	678	0.96

Sequence Information

Coding Sequence: atgGATGATCAAAAATATTGCAGAGTATGCCTTGTGACTGATGTAAAGATGTTTAATTTGGAAACTACAACGAGTACGTCAATCGGTGTAGTTTACTCTCACTTGGCTCAAATTCCGATATTTGACGGGAACCAATATGTATGTTTTGAGTGTGCAAGCCTTCTACACAAGTTTCAAGAGTTCAAATCAAAATGTCTCAGAGCAAACAATATACTGTCTAGATTTGAAGTTGGTTCAACACAGGCAACCAAATCATCTATTAAAAATgtagatagaaaaataaataaattggaatCTACTTTAAAAATTTCCTGTGTGGAGATGTGTGTATGTACCTCCTATGAAGATCCTGCAAATTAcatagaaatagaaataaataaagttgaagAAAATGAAGTCAAACCTTCAGATATTTGTGTTAAAATTGAAGAGgataataaaactgaaatagaCAAAATACCAGACTTTGATGGAGGTCACAATGATACAGATGAAGATTATAATTTATCTTCAGAAGAAACAACTACTATCGACATTGTGTCCAGCAATCCTCCAAAACGAAAAAGAAAagtaaacacacaaacaaaaactaGCAAAAAGAGAAAAATCAAAAGTGAAAACGATCTTGATGATGATAAACCTCTTTCTAAATCTGTCACTAAAAAGGTTGCATCTGCAAAGCCAGCAAAAAAGGTTGTAGCCTCAAAGCCTGTTAAAAAAGTTGCAGCTGCAAAGCCGGTTAAGAAGGCTGCATCAGCATCTCCAAAACGTGTTAAAAAGGTTGCATCATCAAAGTCTACAGAAAAAGATGAAACGGAAAAGGCCAGTAAAAAAAAGGATGGAGTTGATATAGCATTCTTTGATAACTATGCCACAGTTGAGTTTCTTACACATGAAGATGCCAGGAAAGAGGTGCTACTAAGAAGAGAGTCTACTAACTATAAAGTATCACCGTTTAAATGTGATTTGTGTTATAGAGGGTTTGAAGCTAAAAGTGCATTTGAGAATCATATGAAAAGACATAAGACAGAATTTGGTGATCATGAATGTGAGGTCTGTCACCTAAGGTTTCCAACACAAGTGAAACTATGTAAACACCGGCTGTCATGTCATAAGAGAAAGTTTAGCTGTAAATTGTGCTCTTATGTATGTTATTGCATATATCAAGCAAAAACTCATGTTAGTTTACACAAAGGAACGAAATATCCATGTAAACACTGTGGTGAATTATTCAGtaTGCCAAACAGTCTACTAATGCACATGCGTATGAAGCATTTGAAGGAGTCTGTGCGCGAGAGTGTCTGTGAGATGTGTGGTAGCACGTTCAGAACACCACACGGATTGTACCTGCATAACATGAAGGTGCATAGACAGGAAAAGAATGAGAAGCTCGGTCCACAATGTGACGATTGTGGCGTGCACTTTGCATCAGAACTGGCTTGGAAGCGACACTTAGTGATTGCAACCAAACATAAAGTCAGTAACGGCTGCAAATTCTGTGGCGAAACGTTTGCAAACGAAGACGACTTGAAGACTCACCTGAAAGTGCATTCACGGAAGCAAATCAACAGAAATCTAACCAAGTTGCCTGGCCCTTGTGCTATATGCCACAAATGGGTAGAGAATCGCGCGGAGTACAAAGCGCACATGACGTCAGAACACCCGCAGTGTGACGAAGCGAAGAAGTTCCACCAAGAAGATCAGACGCCTTTCGTATGTGAAGTTTGTGGGAAGATGTTCAAGAAACAATGCTTCCTAACATACCACCAGCGCAAACACACGGGCGAGCGTCCATACAAGTGCCCGGTGTGCGACAAGGCGTTCCAGCTGGCGGGCGCGCTCACCATCCACCGCGCCATACACGAGCGCACGCGCACACACAAGTGCCACGTCTGCGAGAGAGTCTTCACCTTCCGCACTACGCTCAACAAGCATATGAAGATACACCTCGGTATTCGACCTCACAAATGCACTCTCTGCGAAAAGGGCTTCATTCACTTGTGCGACTTGAAACTGCATATAAAATACGTGCACGACAAGGTACCCTGGCCTAAGAAGAAAAACAAGAGGAACGTTGATGATACAGCTTATTTGGACTATAATTGA
Protein Sequence: MDDQKYCRVCLVTDVKMFNLETTTSTSIGVVYSHLAQIPIFDGNQYVCFECASLLHKFQEFKSKCLRANNILSRFEVGSTQATKSSIKNVDRKINKLESTLKISCVEMCVCTSYEDPANYIEIEINKVEENEVKPSDICVKIEEDNKTEIDKIPDFDGGHNDTDEDYNLSSEETTTIDIVSSNPPKRKRKVNTQTKTSKKRKIKSENDLDDDKPLSKSVTKKVASAKPAKKVVASKPVKKVAAAKPVKKAASASPKRVKKVASSKSTEKDETEKASKKKDGVDIAFFDNYATVEFLTHEDARKEVLLRRESTNYKVSPFKCDLCYRGFEAKSAFENHMKRHKTEFGDHECEVCHLRFPTQVKLCKHRLSCHKRKFSCKLCSYVCYCIYQAKTHVSLHKGTKYPCKHCGELFSMPNSLLMHMRMKHLKESVRESVCEMCGSTFRTPHGLYLHNMKVHRQEKNEKLGPQCDDCGVHFASELAWKRHLVIATKHKVSNGCKFCGETFANEDDLKTHLKVHSRKQINRNLTKLPGPCAICHKWVENRAEYKAHMTSEHPQCDEAKKFHQEDQTPFVCEVCGKMFKKQCFLTYHQRKHTGERPYKCPVCDKAFQLAGALTIHRAIHERTRTHKCHVCERVFTFRTTLNKHMKIHLGIRPHKCTLCEKGFIHLCDLKLHIKYVHDKVPWPKKKNKRNVDDTAYLDYN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00786267;
90% Identity: iTF_00784655;
80% Identity: -