Basic Information

Insect: Helicoverpa assulta
Gene Symbol: -
Assembly: GCA_029618815.1
Location: CAWLCW010000003.1:6194132-6202484[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.57 51 5.4 2.9 1 23 385 407 385 407 0.95

2 8 9.9e-08 8.8e-06 26.7 2.1 1 23 455 478 455 478 0.97

3 8 5.9e-05 0.0053 18.0 0.5 2 23 484 505 484 505 0.97

4 8 6.9e-05 0.0061 17.8 3.7 1 23 513 535 513 535 0.97

5 8 3.5e-06 0.00031 21.9 1.4 1 23 540 562 540 562 0.96

6 8 4.1e-06 0.00036 21.6 1.5 1 23 571 593 571 593 0.99

7 8 1.4e-06 0.00013 23.1 0.5 1 23 599 622 599 622 0.97

8 8 0.31 27 6.3 1.0 1 14 628 641 628 651 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.57	51	5.4	2.9	1	23	385	407	385	407	0.95
2	8	9.9e-08	8.8e-06	26.7	2.1	1	23	455	478	455	478	0.97
3	8	5.9e-05	0.0053	18.0	0.5	2	23	484	505	484	505	0.97
4	8	6.9e-05	0.0061	17.8	3.7	1	23	513	535	513	535	0.97
5	8	3.5e-06	0.00031	21.9	1.4	1	23	540	562	540	562	0.96
6	8	4.1e-06	0.00036	21.6	1.5	1	23	571	593	571	593	0.99
7	8	1.4e-06	0.00013	23.1	0.5	1	23	599	622	599	622	0.97
8	8	0.31	27	6.3	1.0	1	14	628	641	628	651	0.81

Sequence Information

Coding Sequence: ATGTTGCATAACACTGGTCCTTATGGGCCGAACGAGGCGCCGGTTAACATGGGAGCGCCCGTGAACATGACACCGATAAGTGGGCACTTGAATATAGCTCATAACATCAATAATTTGAACAAAATAGCGCAGCAAGGAGCCCCAGCAGCTAGCGGGCACTACAACCTACAAGACTATGCCCATTACAACCACTCTCCACTAGTTATTCCATCACAAATGGGTCAATATCCGAATTATCAACAACTGGGTTTCCAACATACATATATGAACCAAAATGCGAATAACATTAACGATTTATCCTTTCCAAACGGTATGTTTCCAATGAATTTGAATATACAGAACGAGCACAATGCCAACATGATGAATAGCGCGTACGATAAGCGATTTATCGACGCAGCGAGGCACGACAGTTTACGAGATCAGAATGCAATAAAAACTCCTTTAAATATACCTCAGATACCAAATAAATCGTATATTAAACATAACAGCGTCAACAACGACTATATACACAGCAATATATATCACAACGCGCCTAATAACTTAGATTTAAGCATAAAACCGCAAGAAAAATTACATATAGACAGCACGAGGCGGAAAAACATTGAAAACACTGTGAAATTAATtgaagatattttaataaattcatcgAATAAACCCCGAGAACCGCCAAGCACTCCTATTGTACCGAACAATATGAAAACCAATCTTTCATCAGATATGACAATCGAAAAAGCCCCAAAGCCTTTCAGAAATGCAGAAAACACAACTACAAATACATTACCACCACAACCAACAAAGGAATTATCAAAAGAACCGTCAAATACGGACAACAATGAACCGAATAACACCGTTAACAGCAGTAAAAGCAAAACGCAGTCAGAAAACGATTCTTCAAGTGAGGAAGAGGACTTAAAACCTTTAGGTATAATGCAACACTTCATAACGGAAAACGCAGAGGTAACTACGGACAATACAATTGAAATCAAAGTGGAAAAAGCCAGTTGGGCAGACTCAGATTGTTACGCACCTTTCAGTAAAGACGTAAATGGTTTCCACAGAGAAGGACAGGTGAATTACAGGATTATTGAAGGAGATTGTAGCGTTTCTGAAGCGGTTGCTGCttataaaaatgACATAAAACCAGAAGGAGTATTCGAATGTCCGCACTGTGCACTCCTATTTAAGCACCCAAAACGGTTTCTAATCCACAACAAATGGCATACCTTTGGCCTAACGCACATTAAACGCATGGAAATAGCAAAAGTAAGAGAACAGAAACGGTTTGAACGTAAAGAAGCAAAGATTATAGAGCGAATGAACTCTAAAGAGGTAACGGAGGAAGTGAACGTAGATGGTAAAACTTTTCCGTGTAAAGATTGTGATAAAGTGTTCACTTCCAAAAGTAGTTTGAAGAATCATAGACAGAGGTCTCATCCGACACGTATAAGAGAATGTAAGATCTGTCACAAGTCCATGTCATCCTGGGCGGCGTTGAGAGTACACATGGCTACTCACACAGCGGAGAGCGGCGCGGGGTACCAATGCCGCGAGTGCCCCAAGCGGTTCAAGTACTCGCACTCCCTCGCCAAGCATTCTGATACGCATTTGGAAAAAACCCATGCCTGCACTGACTGCCCGAAGAAGTTCGGCTCTCAAGCGCTCCTGAAGATGCATATGAAGACACACGAGCGAATTTTGCGCGGAGCCACCTTCAGGTGTACCTACTGCGGGAAGGGGTTCTTTGAGTCTTATAGTTTGCAGgtACATGAAAGAACGCATCGCAACGAAAGGCCCTATTCATGTGATATCTGTAACACGGCCTTCGGAACCAACTCTAGTCTCAAGAGGCACTTGAAAGTGTCCCACAGTACTTCGAAGCCCCATCAGTGTACAGTATGTCGCCGCAACTTCTCCACGGAGTCGATACGAGACCGCCACGAGTCCAGGGTGCATGGCAAACCCGAAGACTTCAAGTTTCCCTGCAAACAGTGCGCTTGCAAatatttaaaactaaaagatCTACAGAAGCATGTCTACAAAATGCATCCAAAAGGTAAAAGGAAGAAAAAGTCAAAATCTAGCGAATCTGAATGA
Protein Sequence: MLHNTGPYGPNEAPVNMGAPVNMTPISGHLNIAHNINNLNKIAQQGAPAASGHYNLQDYAHYNHSPLVIPSQMGQYPNYQQLGFQHTYMNQNANNINDLSFPNGMFPMNLNIQNEHNANMMNSAYDKRFIDAARHDSLRDQNAIKTPLNIPQIPNKSYIKHNSVNNDYIHSNIYHNAPNNLDLSIKPQEKLHIDSTRRKNIENTVKLIEDILINSSNKPREPPSTPIVPNNMKTNLSSDMTIEKAPKPFRNAENTTTNTLPPQPTKELSKEPSNTDNNEPNNTVNSSKSKTQSENDSSSEEEDLKPLGIMQHFITENAEVTTDNTIEIKVEKASWADSDCYAPFSKDVNGFHREGQVNYRIIEGDCSVSEAVAAYKNDIKPEGVFECPHCALLFKHPKRFLIHNKWHTFGLTHIKRMEIAKVREQKRFERKEAKIIERMNSKEVTEEVNVDGKTFPCKDCDKVFTSKSSLKNHRQRSHPTRIRECKICHKSMSSWAALRVHMATHTAESGAGYQCRECPKRFKYSHSLAKHSDTHLEKTHACTDCPKKFGSQALLKMHMKTHERILRGATFRCTYCGKGFFESYSLQVHERTHRNERPYSCDICNTAFGTNSSLKRHLKVSHSTSKPHQCTVCRRNFSTESIRDRHESRVHGKPEDFKFPCKQCACKYLKLKDLQKHVYKMHPKGKRKKKSKSSESE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00786316;
90% Identity: iTF_00784648;
80% Identity: -