Basic Information

Insect: Helicoverpa assulta
Gene Symbol: -
Assembly: GCA_029618815.1
Location: CAWLCW010000019.1:8164212-8169100[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.01 0.92 10.9 0.8 1 23 27 48 27 48 0.80

2 8 8.9e-05 0.0079 17.4 0.2 3 23 56 76 54 76 0.96

3 8 0.0077 0.68 11.3 1.9 1 23 92 114 92 114 0.95

4 8 5e-07 4.5e-05 24.5 4.5 1 23 120 142 120 142 0.98

5 8 0.00024 0.022 16.1 4.4 1 23 148 170 148 170 0.98

6 8 3.5e-07 3.1e-05 25.0 0.3 1 23 176 198 176 198 0.99

7 8 6.7e-05 0.0059 17.8 1.2 1 23 202 224 202 224 0.98

8 8 2.8e-05 0.0025 19.0 0.1 1 23 232 255 232 255 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.01	0.92	10.9	0.8	1	23	27	48	27	48	0.80
2	8	8.9e-05	0.0079	17.4	0.2	3	23	56	76	54	76	0.96
3	8	0.0077	0.68	11.3	1.9	1	23	92	114	92	114	0.95
4	8	5e-07	4.5e-05	24.5	4.5	1	23	120	142	120	142	0.98
5	8	0.00024	0.022	16.1	4.4	1	23	148	170	148	170	0.98
6	8	3.5e-07	3.1e-05	25.0	0.3	1	23	176	198	176	198	0.99
7	8	6.7e-05	0.0059	17.8	1.2	1	23	202	224	202	224	0.98
8	8	2.8e-05	0.0025	19.0	0.1	1	23	232	255	232	255	0.96

Sequence Information

Coding Sequence: ATGCACGATCCTGTTAAATCTCGTCCCATAGAGTTTCCAGTGGAGAACACAGACGGTTCACAAGTTAGCGACCGCCAATACATATGTCCGATATGCGACAAAGTATTTCCCATGGACTACAAACACATACACCAGAACTCACACAAGTCTTCCGCTAAAATAAACTGTGGAATCTGTAACAAGAAGTTCACTTCTACAGAGTACCTCGAAATGCACgctaatatacataatattgataaggcACCAGTGAACAAACAGGATAAGAACTTACCATACAACTGTATATATTGTAACCGAAGGTTTGCTAGGCCCCACGAAAAAGTTAAACACGAAAGGATACATACAGGAGAGAAGCCGCACTCGTGCGAGATCTGCGGCAAGTCGTTCCGCGTGTCGTACTGCCTCACGCTGCACATGCGTACCCACACCGGCGCCCGGCCCTACGCCTGCCAGCAGTGCGGGAAGAGGTTCAAAGCGCACAGCGTGTATAACCATCATATGCTGACTCACTCAGAGGTACGCGCCTACAAGTGCCCCTACTGTCCCAAAGCTTTCAAGACGTCGGTACAACTGGCCGGACACAGGAACTCTCATACCAAACCGTTTCAGTGCCAACATTGTAATAGGCCATTCGCGTCCCTATACGCGGTGCGAGTGCACACAGAGACGCACGCGCGTCAGAACAACTTGAAGTTCTCGTGTGAGCTGTGCGGCGCCAGCTACGCGCGGGCCTTCGCCCTCAAGGACCACATGAAGCAGGCGCACAAGCAGGAGCCGCCGCCCTCGCCTACGCAAACCattCCTACGGAAGAAGATTGGAGTGCCGCCGATACAGATCCACTTAACAAAGATCTGACGCATGAAatcGACCTGGGCATTAGTTCCAACGAGATGATCGTTCCTTAA
Protein Sequence: MHDPVKSRPIEFPVENTDGSQVSDRQYICPICDKVFPMDYKHIHQNSHKSSAKINCGICNKKFTSTEYLEMHANIHNIDKAPVNKQDKNLPYNCIYCNRRFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACQQCGKRFKAHSVYNHHMLTHSEVRAYKCPYCPKAFKTSVQLAGHRNSHTKPFQCQHCNRPFASLYAVRVHTETHARQNNLKFSCELCGASYARAFALKDHMKQAHKQEPPPSPTQTIPTEEDWSAADTDPLNKDLTHEIDLGISSNEMIVP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00111915;
90% Identity: iTF_00784626;
80% Identity: -