Basic Information

Insect: Helicoverpa assulta
Gene Symbol: -
Assembly: GCA_029618815.1
Location: CAWLCW010000025.1:2961811-2964186[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0042 0.37 12.2 0.3 1 23 47 70 47 70 0.96

2 18 0.82 72 5.0 0.4 2 23 97 118 96 118 0.95

3 18 0.8 70 5.0 1.1 1 23 140 162 140 162 0.97

4 18 1.9e-05 0.0017 19.5 1.0 1 23 166 188 166 188 0.98

5 18 3.9 3.4e+02 2.8 0.3 1 23 193 216 193 216 0.84

6 18 0.0046 0.41 12.0 0.3 1 23 222 245 222 245 0.90

7 18 0.0033 0.29 12.5 1.0 1 23 252 275 252 275 0.95

8 18 0.26 23 6.5 0.1 1 17 282 298 282 299 0.92

9 18 0.0059 0.52 11.7 0.1 1 23 333 355 333 355 0.97

10 18 4.5 4e+02 2.6 1.2 2 23 379 401 378 401 0.92

11 18 0.00042 0.037 15.3 3.5 1 23 423 445 423 445 0.98

12 18 0.00039 0.034 15.4 0.5 3 23 451 471 449 471 0.96

13 18 0.004 0.36 12.2 0.4 1 23 478 501 478 501 0.94

14 18 0.0025 0.22 12.9 1.8 1 23 507 530 507 530 0.91

15 18 0.027 2.4 9.6 0.7 1 23 536 559 536 559 0.96

16 18 3.2e-05 0.0029 18.8 0.8 1 23 565 587 565 587 0.97

17 18 5.2e-06 0.00046 21.3 1.2 1 23 593 615 593 615 0.99

18 18 0.00035 0.031 15.6 5.2 1 23 621 643 621 644 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0042	0.37	12.2	0.3	1	23	47	70	47	70	0.96
2	18	0.82	72	5.0	0.4	2	23	97	118	96	118	0.95
3	18	0.8	70	5.0	1.1	1	23	140	162	140	162	0.97
4	18	1.9e-05	0.0017	19.5	1.0	1	23	166	188	166	188	0.98
5	18	3.9	3.4e+02	2.8	0.3	1	23	193	216	193	216	0.84
6	18	0.0046	0.41	12.0	0.3	1	23	222	245	222	245	0.90
7	18	0.0033	0.29	12.5	1.0	1	23	252	275	252	275	0.95
8	18	0.26	23	6.5	0.1	1	17	282	298	282	299	0.92
9	18	0.0059	0.52	11.7	0.1	1	23	333	355	333	355	0.97
10	18	4.5	4e+02	2.6	1.2	2	23	379	401	378	401	0.92
11	18	0.00042	0.037	15.3	3.5	1	23	423	445	423	445	0.98
12	18	0.00039	0.034	15.4	0.5	3	23	451	471	449	471	0.96
13	18	0.004	0.36	12.2	0.4	1	23	478	501	478	501	0.94
14	18	0.0025	0.22	12.9	1.8	1	23	507	530	507	530	0.91
15	18	0.027	2.4	9.6	0.7	1	23	536	559	536	559	0.96
16	18	3.2e-05	0.0029	18.8	0.8	1	23	565	587	565	587	0.97
17	18	5.2e-06	0.00046	21.3	1.2	1	23	593	615	593	615	0.99
18	18	0.00035	0.031	15.6	5.2	1	23	621	643	621	644	0.96

Sequence Information

Coding Sequence: ATGCGCCGGCGTCGACGCGCGAACAACCAGCTCCCGGAAGAGTCCGAGAAAAGAATATCCAAAACTATGATGCGTAGGAACGCCATGATCCTTCTGGAATGTTCCACGGCCTGGGCTTTTAGATGGTTCCATAGTTCGTTTTATTGTTCTTACTGCGAAGCGAAATTCGTTGATGTACCTCTTCTTAGGAACcatgttaaaaataatcatcttAATGACATGCCTACTACAAGAATTTTCTCCAAGCTGACTGAAAATAATATGGTGAAAGTTGATGTAGCTGAACTTAGTTGTAGGTTCTGTAGCAGACTTCTAAATAGTATTGACTCTTTAAAAGACCATCTGCTTATACATGGAAAGACCTTAAACGTCCAATACAGCGATGGCGTCCTACCTTTTAAGTTAGACGAAGAATCTTACACTTGCCAAATGTGCTTCGCCCAGTTCCTCACATTCGGCAAAATAAACGAGCATATGAACACACATTTCCAAAATTATATTTGCGATTCTTGCGGGAAGGCTTTCGTTTCCAAGTCGAGATTTAGGAAACATGTACAGTCACATGAAAAAGGATGTTTCCCTTGTGGCGAATGCGATGAGATTTTGGAAACTCGCGCATCGCGTATGTGTCATATAATGAGAATACATAGGAAAGGGGTACGTTACGCCTGTCCACGATGTCCTGAGGTCTTCACAACTTACCATTCTAGAGCTAAACATTTAGTAGAAGCCCACGATCAGCAGAGAAAAGAATACTTTTGTAATGCCTGTGATAAGACGTTTGAAACCAGCTCAAAAAGGGCGGGGCATATACGCCAAACGCATGCGAATATAGAAAAAAGACATTACTGTACAAATTGTCCTTCGGTGTTTGTTAggtccGTCGATCTGAAAGTTAAATGGACTCCGAAACGCAAGTATAACGATAACAGGGATAATGCCGCTATCATTCTAGAATGTTCCAATGCTATTCCCTTTCGGTGGAAGCGAGGGGCCTTCACTTGTGCTTACTGCCCACTCTCCTTTGGAGACTTCAGTGGCGTGAAGGACCATATCTCTGAACATCCCAATAGGATCGAAGCTCTCCGCTTAGCTAGGACATTTTGTAACGTCAAAATGGAAGTTACCGAGCTCCGCTGTGAACTATGTCTCACTAACATGACGAATCTAGATAGCCTTTGCGAACATTTGATCCAAAAACATAACAAACCAATCGTCACGAAGTTTGGTTTAGGAGTGACACCCTTCTATCTAACTGGTACTGAATATAATTGCACGCATTGTGATGAATCTTTTGAGCTGTTCTCGAAATTGAACACTCATTTAAATAAGCATTATCCTAATAGCATCTGTTTTCAATGCGGGAAAGCTTTCTCTTCTGTTTATCGTTTGAAATCTCATCTATCTATCCACGACTCTGCCGCTGTCCAATTCAAATGTTCGAAATGCGACCTAATCTTCGCAACTCGTGTCTTAAGAAATAACCATATTACGCTGATCCATGGACCAGAATATAGGTACAGATGTCCGTATTGTCAAGAGTGCTTTAAAAGCTATGCTGATAGAGGCAGACATCTAACCGAAGCCCATGATAAGAAAATTGAATACGCTTGTAATCTCTGCCCAGCTGTTTTCGCTATGTGCAACCAAAGAACTAAACATATTAAACAAGTACATATAAGAATAAAGACGTTTGCCTGCAATTTCTGTTCGTACAAATTCGTGACCGCCGCCCAATTGAAAAGTCATATGATAAAACATGTAGGGGAGAGGAAGTTTCAATGTCAGGTCTGCAAAAAGGCGTACGCAAGAACTAAAACGTTGAGGGAACATATGAGGATTCATAATAATGATAAAAGATTTGTTTGTCAGTATTGTAGTAATGCTTATGTGCAGAAATGTAGTTTACAGAGTCATATGCGGACTCATCATCCTACTGCTGAGCCCTTGAAAAAGATTAAGTTGTCACAtctgtattaa
Protein Sequence: MRRRRRANNQLPEESEKRISKTMMRRNAMILLECSTAWAFRWFHSSFYCSYCEAKFVDVPLLRNHVKNNHLNDMPTTRIFSKLTENNMVKVDVAELSCRFCSRLLNSIDSLKDHLLIHGKTLNVQYSDGVLPFKLDEESYTCQMCFAQFLTFGKINEHMNTHFQNYICDSCGKAFVSKSRFRKHVQSHEKGCFPCGECDEILETRASRMCHIMRIHRKGVRYACPRCPEVFTTYHSRAKHLVEAHDQQRKEYFCNACDKTFETSSKRAGHIRQTHANIEKRHYCTNCPSVFVRSVDLKVKWTPKRKYNDNRDNAAIILECSNAIPFRWKRGAFTCAYCPLSFGDFSGVKDHISEHPNRIEALRLARTFCNVKMEVTELRCELCLTNMTNLDSLCEHLIQKHNKPIVTKFGLGVTPFYLTGTEYNCTHCDESFELFSKLNTHLNKHYPNSICFQCGKAFSSVYRLKSHLSIHDSAAVQFKCSKCDLIFATRVLRNNHITLIHGPEYRYRCPYCQECFKSYADRGRHLTEAHDKKIEYACNLCPAVFAMCNQRTKHIKQVHIRIKTFACNFCSYKFVTAAQLKSHMIKHVGERKFQCQVCKKAYARTKTLREHMRIHNNDKRFVCQYCSNAYVQKCSLQSHMRTHHPTAEPLKKIKLSHLY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -