Hass027978.1
Basic Information
- Insect
- Helicoverpa assulta
- Gene Symbol
- Zfy1
- Assembly
- GCA_029618815.1
- Location
- CAWLCW010000032.1:459417-464514[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.027 2.4 9.6 0.4 2 23 245 266 244 266 0.96 2 15 0.055 4.8 8.7 0.1 6 23 278 296 278 296 0.94 3 15 0.043 3.8 9.0 0.3 3 23 308 329 307 329 0.96 4 15 2.8e-07 2.5e-05 25.3 0.9 2 23 351 372 351 372 0.97 5 15 8e-05 0.0071 17.6 0.0 3 23 381 402 379 402 0.96 6 15 1.1 93 4.6 0.1 1 23 408 430 408 430 0.95 7 15 8.9e-06 0.00078 20.6 0.3 1 23 436 458 436 458 0.97 8 15 4.2 3.7e+02 2.7 0.5 1 10 464 473 464 477 0.84 9 15 0.15 13 7.3 1.9 1 23 586 608 586 608 0.97 10 15 0.00038 0.034 15.4 2.0 2 23 615 637 614 637 0.92 11 15 3.9e-06 0.00034 21.7 0.5 1 23 643 665 643 665 0.98 12 15 2.2e-07 2e-05 25.6 3.4 1 23 671 693 671 693 0.98 13 15 0.00013 0.012 16.9 0.2 1 23 699 721 699 721 0.98 14 15 0.02 1.8 10.0 0.1 6 23 731 748 730 748 0.93 15 15 0.0025 0.22 12.9 1.0 6 23 758 776 757 776 0.98
Sequence Information
- Coding Sequence
- atgaataaagaACCTGAGCAGGTATTTATTGTAAATGCTGCCCCGACTCAACCGTCGAGTTCTCCACCGAAACTGTTGGAAGTGGAAGTGTCGGACACCTCACAGGTGAACCTTGAGAATGTGGAAGACTTTTCGCACGTATGTCGGATATGCGCCACCATCACAGAGTTTGTCATACCCATATTCTCCGGGGAGGGGCTGCAGAACAACCTAGCTGATAAAATTCATAAGCACTTACCAATAAAGGTATGTTCGACGGACGCCCTGCCGGTGGTGGTGTGCTACCAGTGCGCGAGCACGCTGCTGGCATGGCACGAGCTGGTGCAGTGCTGCGTGCAGGCCGACGCGGCGCTGCGGGCGCGTCTCGACGCCATACAACAGAAATCAACAGCTCAGATCATAACCGACACCCCCAGTACAGAAGACGACGCACTAAGCAAGTTGTTTTACAAAAACGTGAAAAATGCGCTCATTGAGTTTGGTATCGATGTGGAGCAAGGCGAGCCGGATGTGGAGTTTGTCTGTCAGAAGTGCTCGGAGAAGCCGGCGCTGAGCGCCGCGCGCAGCCTCGCCCAGCACGTGCGGCACGAGCACAGCATCGACGTACATGCGGACAATGTCCACGCGTTCATCACTAATTACGTGACGTTCGAGCAAGTGCTGGCGGACGACTCGGACAGGGAGACACACACGGACACTCAGGACAAGTCGCCGGTGCAGCTCGCGCAGCTGATCTGTCCGTTCTGCGGCAGCGTGTTGTCGTCGGCGACGCGGCTGGTGCACCACCTCAACCGACACGTGCCCGTGTGCCTGGCGGCCGGCGCGGAGTGCTGCGGGCACAGCTACACGCGGCCGCGAGCGCTGGCGCAGCACCTGCAGGACGCGCACGTGCGCGCCGACCTGCCCGCCGCGCAGCCGCCCTGCTGCAGCTGCGGCTTCAGCGCTGCCGACGCCGACCTGCTCAAGCAGCACTACCAGACCGCGCACGCCGACCACAACACCAAGCAGAAGAAAATAGAGAGCCCCAACAACCAGAAGTACATCCCGGCCGTGTGCCCCGAGTGCAACAAGACCTTCTCCAACAAGTACAACATGTTCGCGCACCTGCGCTCGCACtccgcgccccgcgcccgccTCGCGTGCCCGCGCTGCCCGCGCTCCTACTCCCGGCGCGGCGCGCTGGCGCAGCACGTGCGCGTGGCGCACGAGGGCCGCCTGCCGCACGTGTGCGCGACGTGCGGCGACGCCTTCCCGAGCCGCGCGCAGCGCGACGTGCACGCGCGCCTGCACTCCGGCAGCGCGCCCTACGCCTGCACGCGCTGCGGCAAGGCCTTCCGCGCCAAGAACACGCTCGCCCGACACATGGAGATGCACCTGGGCATAAGGAGATATAAGTGCGAGATCTGCTTCAAGGCGAGCTCCTACGACTCGCGCCAGGAGCCCCTCCGCCCTCGCAGGCTCTCCGACCTGTCCGATGACGCGCCGCTCGCCAGCCTGGCCAGCAAGCCCAAGCATCTCTATGATCATTTCTACAGGGCGCTAGAGAATTTTAGAAATCATTTTGTAAATGATCATCACGATGAGAAGTATTCGGAGTCCAGCTCGTCTAGCTCGTCAGAAGAGTGGGTCGCGGAAGACACCGAGGTGGACAGGTTCGACGACCTGTCGGCGCGCAACATGCGGCGCGACCGGCTGGATGACGCCACGCGGCGCGAGCTGAGCGCTGTGCAGACGCGCGTCGGCGACAAGACGTACTACACGTGCGCCACGTGCGGCAAGCAGCTCAGCTCGGCGCACACGTACGTGTTCCACCGCCGCATCCACACGGGCGAGCGGCCCTGCGTGTGCCACGTGTGCGGCAAGCAGTTCCGCGCGCCCAACGGCCTGCAGCGCCACCTCACCGAGACGCACGAGCGCCTGCGCCGCTACGCCTGCTCGCTCTGCGCCAAGACCTTCGCCAACTCGCAGAACCTCAAGCAGCACCTGCGCATCCACACCGGCGAGAAGCCCTTCGTGTGCCCGCACTGCGGCAAGCGCTTCACGCAGAGCGGCTCCCTGCACGTGCACCTCAAGACGCACAGCGAGCTGTTCCCCTTCGTGTGCGCCGAGTGCGGTGCCAAGTTCCGCCTGCGCTCCGGCCTCGCGCGCCACCGCCTGCGCCACACCGGCGAGCGTCCCCACGCCTGCGCCTGCGGCCGCGCCTTCCGCACGCGCCACGAGCTCGCCGCCCACGCCGCCGCGCACTCCGGCGCCCGCCCCCACGCCTGCGCCTGCGGCCGCGCCTTCCGCCAGCGCCGCGCCCTGCGCCACCACGCGCGCCGCGCCCACCCCGACCCGCCCCCGCCGCCCTACTAG
- Protein Sequence
- MNKEPEQVFIVNAAPTQPSSSPPKLLEVEVSDTSQVNLENVEDFSHVCRICATITEFVIPIFSGEGLQNNLADKIHKHLPIKVCSTDALPVVVCYQCASTLLAWHELVQCCVQADAALRARLDAIQQKSTAQIITDTPSTEDDALSKLFYKNVKNALIEFGIDVEQGEPDVEFVCQKCSEKPALSAARSLAQHVRHEHSIDVHADNVHAFITNYVTFEQVLADDSDRETHTDTQDKSPVQLAQLICPFCGSVLSSATRLVHHLNRHVPVCLAAGAECCGHSYTRPRALAQHLQDAHVRADLPAAQPPCCSCGFSAADADLLKQHYQTAHADHNTKQKKIESPNNQKYIPAVCPECNKTFSNKYNMFAHLRSHSAPRARLACPRCPRSYSRRGALAQHVRVAHEGRLPHVCATCGDAFPSRAQRDVHARLHSGSAPYACTRCGKAFRAKNTLARHMEMHLGIRRYKCEICFKASSYDSRQEPLRPRRLSDLSDDAPLASLASKPKHLYDHFYRALENFRNHFVNDHHDEKYSESSSSSSSEEWVAEDTEVDRFDDLSARNMRRDRLDDATRRELSAVQTRVGDKTYYTCATCGKQLSSAHTYVFHRRIHTGERPCVCHVCGKQFRAPNGLQRHLTETHERLRRYACSLCAKTFANSQNLKQHLRIHTGEKPFVCPHCGKRFTQSGSLHVHLKTHSELFPFVCAECGAKFRLRSGLARHRLRHTGERPHACACGRAFRTRHELAAHAAAHSGARPHACACGRAFRQRRALRHHARRAHPDPPPPPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -