Hass022156.1
Basic Information
- Insect
- Helicoverpa assulta
- Gene Symbol
- -
- Assembly
- GCA_029618815.1
- Location
- CAWLCW010000025.1:3371188-3376397[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0026 0.23 12.8 1.5 1 23 37 60 37 60 0.90 2 17 0.026 2.3 9.7 0.2 1 23 158 181 158 181 0.94 3 17 0.00015 0.013 16.7 2.1 2 23 185 207 184 207 0.94 4 17 0.097 8.6 7.9 0.0 2 23 213 235 212 235 0.92 5 17 0.0013 0.11 13.8 0.9 2 23 243 265 242 265 0.94 6 17 0.07 6.2 8.3 3.3 2 20 272 290 271 293 0.91 7 17 1.3e-06 0.00012 23.2 2.6 1 23 299 321 299 321 0.98 8 17 1.8 1.6e+02 3.9 3.2 1 23 364 387 364 387 0.93 9 17 0.0076 0.67 11.3 0.3 3 23 414 435 412 435 0.94 10 17 0.05 4.5 8.8 2.6 2 23 458 480 457 480 0.93 11 17 0.0017 0.15 13.4 0.0 1 23 486 509 486 509 0.94 12 17 0.00016 0.014 16.6 1.6 2 19 516 533 515 538 0.91 13 17 0.099 8.8 7.8 0.1 2 23 544 566 543 566 0.92 14 17 0.00056 0.05 14.9 1.7 1 23 573 596 573 596 0.96 15 17 0.00054 0.047 15.0 0.3 3 23 604 624 603 624 0.94 16 17 1.3e-05 0.0011 20.1 1.5 1 23 630 652 630 652 0.98 17 17 4.7e-06 0.00041 21.5 0.7 1 23 658 680 658 681 0.96
Sequence Information
- Coding Sequence
- ATGGAAGATAAAATCTCTGAAGAAAGACGGAAAGACCAACTAGCGACAATTCTCACAATTATCATTCAAAATTCTACAATCCTGCCTTTTAGATGGCACAGGAGCAAATATATGTGCTTCTACTGTCAATCTGTTTTCGTCGACAGCTCGAAACTTAAGCAACACACAGACGACTTTCATAGAGAGATCAGAATCAAAGATATAATCATCAGAACTTTACACAGAAAAGCCAGAGTCAAGCTAGACGTGTCTACTCTATGGTGCACGAGCTGCGAAaatgattttcaaaatttccAATCTTATTTGGACCATCTTTCCGACATTCACGGATTTGATTTAGACAATGAGGCTTCATCTTCCTTTGATTGTTTCACTTTAGCTGACAATGGAATGTCATGTATAGAATGTGGacagtattttctatttttcgGACCTCTACTCCTACACACGTACAAGTACCATATTGAGCAGTATTTGTGCGAGATGTGTGGCCAAGGATATGTGGGAAAACGTAATATGGATAACCATGTTCGGCAGACACATGGGATCAAGTCTTGCAAGCATTGCCATGAAATCTTTCCTACGCAGTACGCTCTAACAAATCATATTGAAAACGTGCATAGAACTGACAAACTCCAATGTCCGTTATGCCCAGAAATATTAGCCAACAGATACTTAAAAAAGCGCCATTTAGCGCTAGTCCACGATTGCAAAAGTGCTCAGCTTATATGCGAATACTGctccaaaatatttacaagaaacAATAAATATGTTCAACATAAATTAAGGGTGCATTATAAGGAGAAAAATTGTACTTGCGAAGTTTGTGGACAGAAGGCTTTTAATCTTGATTCATTGAAAAGACATATGGTTTGCCATGACGATGCTAGGCCGTTTAAGTGTGAGACCTGTGACAGAAGTTTTAGAAGGAAGAAGAATCTTGTGATGCATAGACGGGCGCATAGAGAGGATTACGAAGATGCAGAAGACAGACTCTCAGAGCGCCAAAGGAAAGACGACCTCACTAAACTCATCACTATAGTTCTAGAAAATTCTACCATTCTACCATTTCGATGGGCGTCTAACAAATACATGTGTTTCTACTGTTGCTGTGCTTTCGTCGACAGCGTGAAGTTAAGAGAACATACTATTGAGGAACACAGAGATGCAAAATTAAGAAATGTTTTAAGAACTTTAGTAGGCAGTAGTCGGGTAAAGTTGGATACCTCGGAAATAATTTGCAAAAAGTGCGGCAAACAGTTCAACCTCTTCGAAGATTTTTTGACTCACGTGTCTATGGCTCATGATTTCAAATTCAATAGGGACATTTCTAGCTGTATTTTCACATTTAATTTATCAGATAACGGCATGTCTTGTCATGAATGTGGCCAAGAATTTAGATTTTTCGGTCCTTTACTGAAACATGCGCATAAATAtcataataaatacaaaacttttCTTTGCGAAATATGTGGACAAGGGTTCGTCGCCCAAGCGAATGTTACCAGTCACATAAAAAACGTACATTCCATTACAAACGGACAAAAATGTCAGAAATGTGATAAAGTATTCCGCAATCCTTATGCTTTACAAATACATTGTGATAGAATACATAAGATGGAGTTGTTAAAATGCCCTAAATGTCCAGAGATTTTAGCGTCAAAATACTTGAAAAAACAACACTTAGCTTTAGTTCACGATGTTAAAAAACTACAATTTAACTGTGACCAATGTACGAGAGTTTTCACAATGAAAAGTAGGTTAGTCCAGCATCAACTAAGAACTCATTTGAAACAGAAAACTGTAGCGTGCGAGATATGTGGTTTTAAAGTCTTTAATAACGATCTTTTAAAACGTCATATGGTCCGCCATGATGATTCCCGCCCTTTTGAGTGCGAAGTTTGTAGCAAGACATTTCAGAGGAAGAAAACTCTGGAAATTCATAAGAGAATACATACGAATGATAGAAGGTATGTATGTAAAGAGTGCGGGAGGGCGTTTGTTCAAGTTACTAGTTGGAAATTGCATATGAGAGTGCATCATAGCGGAGTTGAGAACTCAGTGTTCAGAGATTTTAGTTAG
- Protein Sequence
- MEDKISEERRKDQLATILTIIIQNSTILPFRWHRSKYMCFYCQSVFVDSSKLKQHTDDFHREIRIKDIIIRTLHRKARVKLDVSTLWCTSCENDFQNFQSYLDHLSDIHGFDLDNEASSSFDCFTLADNGMSCIECGQYFLFFGPLLLHTYKYHIEQYLCEMCGQGYVGKRNMDNHVRQTHGIKSCKHCHEIFPTQYALTNHIENVHRTDKLQCPLCPEILANRYLKKRHLALVHDCKSAQLICEYCSKIFTRNNKYVQHKLRVHYKEKNCTCEVCGQKAFNLDSLKRHMVCHDDARPFKCETCDRSFRRKKNLVMHRRAHREDYEDAEDRLSERQRKDDLTKLITIVLENSTILPFRWASNKYMCFYCCCAFVDSVKLREHTIEEHRDAKLRNVLRTLVGSSRVKLDTSEIICKKCGKQFNLFEDFLTHVSMAHDFKFNRDISSCIFTFNLSDNGMSCHECGQEFRFFGPLLKHAHKYHNKYKTFLCEICGQGFVAQANVTSHIKNVHSITNGQKCQKCDKVFRNPYALQIHCDRIHKMELLKCPKCPEILASKYLKKQHLALVHDVKKLQFNCDQCTRVFTMKSRLVQHQLRTHLKQKTVACEICGFKVFNNDLLKRHMVRHDDSRPFECEVCSKTFQRKKTLEIHKRIHTNDRRYVCKECGRAFVQVTSWKLHMRVHHSGVENSVFRDFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -