Basic Information

Insect: Helicoverpa assulta
Gene Symbol: -
Assembly: GCA_029618815.1
Location: CAWLCW010000025.1:3354531-3356426[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0035 0.31 12.4 3.0 1 23 60 82 60 82 0.98

2 16 0.0036 0.32 12.4 0.1 2 23 110 132 109 132 0.94

3 16 0.016 1.5 10.3 1.0 2 23 153 175 153 175 0.95

4 16 9.6e-06 0.00085 20.5 0.4 1 23 180 203 180 203 0.96

5 16 0.0011 0.096 14.0 1.2 1 23 208 231 208 231 0.96

6 16 0.00096 0.085 14.2 0.1 2 23 234 256 234 256 0.93

7 16 0.0089 0.79 11.1 0.9 2 21 264 283 263 284 0.93

8 16 0.0011 0.1 13.9 1.0 1 23 336 359 336 359 0.95

9 16 6.8 6e+02 2.1 0.0 3 23 388 411 386 411 0.87

10 16 0.97 85 4.7 0.0 2 23 434 457 433 457 0.92

11 16 9.3e-06 0.00082 20.5 0.1 3 23 464 485 463 485 0.94

12 16 0.0029 0.26 12.7 2.6 2 23 490 512 489 512 0.94

13 16 0.0015 0.13 13.6 4.7 1 23 517 540 517 540 0.96

14 16 1.1e-05 0.001 20.2 5.0 1 23 544 567 544 567 0.97

15 16 0.00012 0.011 17.0 0.3 2 23 574 595 573 595 0.96

16 16 3.1e-06 0.00027 22.0 0.6 1 23 601 623 601 623 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0035	0.31	12.4	3.0	1	23	60	82	60	82	0.98
2	16	0.0036	0.32	12.4	0.1	2	23	110	132	109	132	0.94
3	16	0.016	1.5	10.3	1.0	2	23	153	175	153	175	0.95
4	16	9.6e-06	0.00085	20.5	0.4	1	23	180	203	180	203	0.96
5	16	0.0011	0.096	14.0	1.2	1	23	208	231	208	231	0.96
6	16	0.00096	0.085	14.2	0.1	2	23	234	256	234	256	0.93
7	16	0.0089	0.79	11.1	0.9	2	21	264	283	263	284	0.93
8	16	0.0011	0.1	13.9	1.0	1	23	336	359	336	359	0.95
9	16	6.8	6e+02	2.1	0.0	3	23	388	411	386	411	0.87
10	16	0.97	85	4.7	0.0	2	23	434	457	433	457	0.92
11	16	9.3e-06	0.00082	20.5	0.1	3	23	464	485	463	485	0.94
12	16	0.0029	0.26	12.7	2.6	2	23	490	512	489	512	0.94
13	16	0.0015	0.13	13.6	4.7	1	23	517	540	517	540	0.96
14	16	1.1e-05	0.001	20.2	5.0	1	23	544	567	544	567	0.97
15	16	0.00012	0.011	17.0	0.3	2	23	574	595	573	595	0.96
16	16	3.1e-06	0.00027	22.0	0.6	1	23	601	623	601	623	0.98

Sequence Information

Coding Sequence: ATGCCCCAAAGTAACAAAATACCGAAGATTGATAACAGCAGAATTATAGAGAAGAACAATTATTTTTCAGATGGTCTGTTGGGACCGTACGAGGGCTGTACCTCTGAGCGTCGAcgaaaaaacatgaaaatactGTTCAACCACACCACAATAATACCGTTCAAATGGCGAGGCAAATACATTTGCTTCTACTGCGGTAAAAACAGTACCGAGTACACAGAGTTCAGAAAACATACGAAATCACACGGACTATGCTCAACTAAGGACTACTCCCTAAAACTTATCAAGGGAAATCATATCGAAATTAAAATCGATGTCTCGGAAATCTCTTGCGAAGTTTGCAACGAACCCTTTAAAACATTCGATAATATAATCGATCATTTGATCAGTAAACACAATATGGAGTATGAGAGAAATATCGATACTCCGTTCCAGGAGTATCGATTGGCCGATCGCCGATGCTTGCACTGTGAAGAACAGTTCTCGTATTTTGGATATTTAGTGAAACACGTGAACAATGTGCATCCtcaaaaatgtttcatttgcGATGATTGTGGACTCACTTTTAATAAAAAGAGAGATTTGGCCGTTCATTTGAGGAATTATCACAAAACAGGAGGATACCCATGTAATCTCTGCttgaaaaatttcaaaaataacctAGTATTGAGAAGACATCAAAACAATTCGCATTTTAGGCAGTGTATGAGTTGTGGCTTGCGTTTCGCGTCCCTTTCTCTTCTACAAAAACATATAGGAGTCGACCATCCACCTAATGAGGATAATATGAAGTGCAGTTACTGTTCCAAGGAGTTTCACAGCTCGATAGGCTTAATGCAGCATTTGAGCAAGTGTAAAGTCaaattattatctcaagagGACCCTTCTTCACTTAACGAGGAGAGTATAGAACCGAAGAAAAAGCAAAATGTACTTCAAATTAGGCAAAATATACAATGTGTACTGAACATGTCGACTGCTGTGCCTTTCAAATTCTTCTCTAAGTTCTCGTGTTTTTATTGTTCTAAGAAGTTCGTGGAATTTGATGAATTACGACAACACACCGCAGTAGAACACCCTGTATGCGATCTAAAATCTAAATGCATGAAGAAATGTAAAGGCGAAAGGATTTCGGTTAAAATAGATGTTTCGGATCTAGCTTGCAAAGTACCTCTATGTGGCGTACCAATGCCTAATTTAGAAGATCTGATAAACCATTTAATTGAAAGCCATAAAGCGAAATATGATACGTCTATAACCGGCTGTTTAGAACCTTACAGGTTGATTAAAGATAACATGCCTTGTCCTATATGTCCAGACACGGTGTTTCGATACTTTGGGATCCTACTTCGACACATGAGTTCAGTACATAGCAACAATAACCGAATCTGCGATTTCTGCGGTCGAAGTTTCCGCAACGCTGCCAATTTAAATGTCCATATAACGTACGCCCATACGGGGTCCTGTGAATGCGATGTTTGCGGAGCTAAATACAAAAACCAATGGTGTCTAGCACGCCATAGAGCTAGAACACATAACGCGAAAGACCATAAGTGCCCAAAATGTCCCGAAAAGTTTCAATCTCAATACCACACTCagaaacatttaattaaaatccatAACATCGGTCATAAGTGTAGTTATTGCGGTAAAATGTTTACTAGAAACTCCTTCATGAAAGACCATGTACGCCGTACTCATTTGAAAGAGAAGAATATTCCGTGCTCCATATGTAATGAGAAGTTCTTCGATAATTACTTGTTGAAAATGCATATGGTTAAGCATGAGGGCGATAGGAAGTTTACTTGTACTGTTTGCGGGAAGGCGTTTTTGAGACGAAGTAATTTGAGCTCGCACATGGAAATGCATAAGAAGTATGGTCATGTACAGGTTTAG
Protein Sequence: MPQSNKIPKIDNSRIIEKNNYFSDGLLGPYEGCTSERRRKNMKILFNHTTIIPFKWRGKYICFYCGKNSTEYTEFRKHTKSHGLCSTKDYSLKLIKGNHIEIKIDVSEISCEVCNEPFKTFDNIIDHLISKHNMEYERNIDTPFQEYRLADRRCLHCEEQFSYFGYLVKHVNNVHPQKCFICDDCGLTFNKKRDLAVHLRNYHKTGGYPCNLCLKNFKNNLVLRRHQNNSHFRQCMSCGLRFASLSLLQKHIGVDHPPNEDNMKCSYCSKEFHSSIGLMQHLSKCKVKLLSQEDPSSLNEESIEPKKKQNVLQIRQNIQCVLNMSTAVPFKFFSKFSCFYCSKKFVEFDELRQHTAVEHPVCDLKSKCMKKCKGERISVKIDVSDLACKVPLCGVPMPNLEDLINHLIESHKAKYDTSITGCLEPYRLIKDNMPCPICPDTVFRYFGILLRHMSSVHSNNNRICDFCGRSFRNAANLNVHITYAHTGSCECDVCGAKYKNQWCLARHRARTHNAKDHKCPKCPEKFQSQYHTQKHLIKIHNIGHKCSYCGKMFTRNSFMKDHVRRTHLKEKNIPCSICNEKFFDNYLLKMHMVKHEGDRKFTCTVCGKAFLRRSNLSSHMEMHKKYGHVQV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01533270;
90% Identity: -
80% Identity: -