Basic Information

Insect: Helicoverpa assulta
Gene Symbol: -
Assembly: GCA_029618815.1
Location: CAWLCW010000003.1:604173-607336[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1e-06 9e-05 23.5 0.5 1 23 191 213 191 213 0.98

2 14 0.021 1.9 10.0 4.0 1 23 219 242 219 242 0.96

3 14 4.1e-06 0.00036 21.6 0.5 1 23 248 270 248 270 0.98

4 14 1.9e-06 0.00017 22.7 2.3 1 23 275 297 275 297 0.99

5 14 1.8e-05 0.0016 19.6 3.0 1 23 303 325 303 325 0.98

6 14 8e-07 7.1e-05 23.9 1.1 1 23 331 354 331 354 0.95

7 14 2.1e-05 0.0018 19.4 1.9 1 23 360 382 360 382 0.97

8 14 1.7e-05 0.0015 19.7 0.8 1 23 388 410 388 410 0.98

9 14 9.7e-05 0.0086 17.3 2.6 1 23 416 438 416 438 0.99

10 14 1.5e-07 1.3e-05 26.2 0.7 1 23 444 466 444 466 0.98

11 14 3.6e-06 0.00032 21.8 3.5 1 23 472 494 472 494 0.98

12 14 0.071 6.3 8.3 2.9 1 23 500 519 500 519 0.95

13 14 1.7e-06 0.00015 22.8 0.8 1 23 525 547 525 547 0.98

14 14 5.2e-05 0.0046 18.2 3.1 1 23 553 575 553 575 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1e-06	9e-05	23.5	0.5	1	23	191	213	191	213	0.98
2	14	0.021	1.9	10.0	4.0	1	23	219	242	219	242	0.96
3	14	4.1e-06	0.00036	21.6	0.5	1	23	248	270	248	270	0.98
4	14	1.9e-06	0.00017	22.7	2.3	1	23	275	297	275	297	0.99
5	14	1.8e-05	0.0016	19.6	3.0	1	23	303	325	303	325	0.98
6	14	8e-07	7.1e-05	23.9	1.1	1	23	331	354	331	354	0.95
7	14	2.1e-05	0.0018	19.4	1.9	1	23	360	382	360	382	0.97
8	14	1.7e-05	0.0015	19.7	0.8	1	23	388	410	388	410	0.98
9	14	9.7e-05	0.0086	17.3	2.6	1	23	416	438	416	438	0.99
10	14	1.5e-07	1.3e-05	26.2	0.7	1	23	444	466	444	466	0.98
11	14	3.6e-06	0.00032	21.8	3.5	1	23	472	494	472	494	0.98
12	14	0.071	6.3	8.3	2.9	1	23	500	519	500	519	0.95
13	14	1.7e-06	0.00015	22.8	0.8	1	23	525	547	525	547	0.98
14	14	5.2e-05	0.0046	18.2	3.1	1	23	553	575	553	575	0.97

Sequence Information

Coding Sequence: atGTCGGAAATATGGAATATAAGTGGTTTATGTCGGTGCTGTCATGCTGAAGGCAATTTTACGAGTGTAAACGTGTATTCTAACGGAGGAATGGAAGATGATTGTCATGTTTTGTTACGGGATACTTTCGATATTGTTcTAAACCCTTTACCAAACAGCACTGAAACTTACTCCTTGTGCTCCGTGTGTGAGCCAAGGCTGAGGGACGCGGCTGAATTCAAGAAGCAGGTGTTATTGTGTGAAGATAAGTTCAAGCAGTACCTGTTTAGCTGTGGTTTTAAAGATGCAGAGGGAGGAAAagagtttaaaaatgtatttacagATAATGGACTTAAGGAGGAATCAAGTCACGAGCAAACTGGACTGGACTACAAATATGACGATGACAGTCTCCAAGAGCTAGACATATTCATCCAGCCAGCTGAAGACGACGATCAGCCGCTGTCAGTATTGCGCAGCTCCCGAGGGGCGCAGCCCCCGGACAGCGCAGAGCCCGACGCTGAGTGGGCTGCACCACCGGAATTGAGTGAAGACGAAGACCGAAAACCGAAAAACCAGAAGACTAAAAAATACTCCTGCGACATCTGCCAAAAGAAATTCTCTTACAACGGCTCTTTAGAAGTCCATATGAAAGCCCATAACGGTGAAAAATCATTCACTTGTCACCTCTGTAGcaccacacacacaaacaacaAAGAATTAACAAAACATATAACTATAGCACACATAGTTGATAACGCATACCCTTGCACAATTTGCCAAAAGATTTTCGAAAAAGCTAGACTACTCAAAAAGCACATAAAAATCCACTTCGAAGAAAAATTCAAATGTACAGAGTGTAATAAAGAGTTTCAAAGGAAAAAAGGTTTGAAAGAACACATGAAAATACATACAGGGGAGCGGAAATATAGTTGTTCAGTTTGTAATAAGGCTTTCGGTCATAATCAGACGTTGAAATCTCATATGTACACTCATACCGGGGAGAAACCTTATGTTTGTGACGTTTGTGGGCGACGATTTCCTCAGAGAACTCATTTAAAACggcatatatttattatacatacagGTATAAAACCTCATACTTGTGGTGTATGTAATAAGCAATTTTCTAGTAAAAGTTATTTGGCTATACACGAGCGACAACACACGGGAGAAAAACCTTATTCTTGTGAAGTTTGTAAGAAAGATTTCACGGCGTACACGACTTTGAAAGTCCATATGAGAGTGCACACAGGTTTTAAGCCCTACACCTGTAGTTTTTGCAATCGCCAATTCGCTCAAATGGCCAGTTTTAAACTCCACCAAAGAACGCATACTGGAGAAAAACCGTTTTCTTGTAAAGTCTGCAAAAAACCGTTCTCAGATAATgggtatttaaaaatacatatgcGCGTCCATTCGGGGGAGAAACCTTTTTCCTGTGAAGTTTGTAAACGATGTTTTAGGGAAACTGGTCAGTTGAAAAGACACATGCGAGTTCACACTGGTATTAAGCCTTATACTTGTAAAATTTGTAACAAACAAATAGGTAATTTATCCAAGCATATGAGGGTGCATTCCGAAGAAAGGCCTTTTAGTTGTAATATTTGTAGTAAGCAGTTTTCTATAAACGGTAATTTGAAGCTACATATGAGGATTCATACTGGGGAGAAACCTTTTGCGTGCGAGATATGCAACAGTCAGTTCACCCAGAGTAGTGGATTGAAACGTCATAGGTGCACTCATGTTGAAAAAAATGATGGTTTGAGGTCTTAG
Protein Sequence: MSEIWNISGLCRCCHAEGNFTSVNVYSNGGMEDDCHVLLRDTFDIVLNPLPNSTETYSLCSVCEPRLRDAAEFKKQVLLCEDKFKQYLFSCGFKDAEGGKEFKNVFTDNGLKEESSHEQTGLDYKYDDDSLQELDIFIQPAEDDDQPLSVLRSSRGAQPPDSAEPDAEWAAPPELSEDEDRKPKNQKTKKYSCDICQKKFSYNGSLEVHMKAHNGEKSFTCHLCSTTHTNNKELTKHITIAHIVDNAYPCTICQKIFEKARLLKKHIKIHFEEKFKCTECNKEFQRKKGLKEHMKIHTGERKYSCSVCNKAFGHNQTLKSHMYTHTGEKPYVCDVCGRRFPQRTHLKRHIFIIHTGIKPHTCGVCNKQFSSKSYLAIHERQHTGEKPYSCEVCKKDFTAYTTLKVHMRVHTGFKPYTCSFCNRQFAQMASFKLHQRTHTGEKPFSCKVCKKPFSDNGYLKIHMRVHSGEKPFSCEVCKRCFRETGQLKRHMRVHTGIKPYTCKICNKQIGNLSKHMRVHSEERPFSCNICSKQFSINGNLKLHMRIHTGEKPFACEICNSQFTQSSGLKRHRCTHVEKNDGLRS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00172047;
90% Identity: iTF_00784580;
80% Identity: -