Hass001395.1
Basic Information
- Insect
- Helicoverpa assulta
- Gene Symbol
- -
- Assembly
- GCA_029618815.1
- Location
- CAWLCW010000001.1:7156483-7156887[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.2e-10 8.6e-08 32.6 0.0 2 41 17 57 16 59 0.92
Sequence Information
- Coding Sequence
- ATGGTGCGGACATATGTACCAAAAAACACAACTAGACCAGTTGTGAATGAAGAATCTATACAGTCAGCAATACAGGATGTTGTGCAAGGAGTATTGTCATATAGAAAAGCTGCGGACAAATACAATTTGAAATTGTCAACATTAGAAAGTcgagtaaaaaaatacaagaatagCAATGATGCTGAAGGGTCAAGCAACCGTACATTTGACTCTAAATATACAAGTTTCCAAGTCTTTTCTATTGAAGAAGAAAAGCTgctaaatgattatattatcaAATGTTGTAAGATGCATTATGGACTTACGACGATTCAAACAAGAAAGCTAGCATATGAGTACGCCAAATCTTTGAGTTTGAAATATCCAGCAAAGTGGGAAGAAACTAAGATGGCTGGGAAAGAATAG
- Protein Sequence
- MVRTYVPKNTTRPVVNEESIQSAIQDVVQGVLSYRKAADKYNLKLSTLESRVKKYKNSNDAEGSSNRTFDSKYTSFQVFSIEEEKLLNDYIIKCCKMHYGLTTIQTRKLAYEYAKSLSLKYPAKWEETKMAGKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01155117;
- 90% Identity
- iTF_00071331; iTF_00071332; iTF_00071333; iTF_00755397;
- 80% Identity
- -