Hass027124.1
Basic Information
- Insect
- Helicoverpa assulta
- Gene Symbol
- -
- Assembly
- GCA_029618815.1
- Location
- CAWLCW010000031.1:2817596-2818978[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.3e-11 5.2e-09 36.5 0.1 2 41 10 49 9 52 0.90
Sequence Information
- Coding Sequence
- ATGCCTCCACGTCGAGCTCCGTGGACTCAAGAAAACTTGCGTTCTGCTATGGCAGCCGTACAACGAGGGCAGTTGACGCAGCGTGGTGCAGCAGAGCGATATAATATACCTAGACGTACGCTAAGGAACCACTTGAAAAGTGGAAATACAATGCGATGTTTAGGACGCCGTTCAATTATGACTGAAGCTCAAGAATGTGATCTTGTCAACAGAATCATAAGATTTGCAAATATAGGGATGCCACTTACTCCAAAGCTTATTCGCAGACAAGCAttcattttttgtgaaaaatatgagCTAAAACATAACTTCAACGCAGACATTGGCCTTGCTGGCAAAGACTGGCTAAAGATGTTTTTGAAACGGCATCCAGAAATTTCAAAGAGAAAGGCACAGTTCATGAATCCAGCTAGGGCGCAAAAGCTAAACAGACCAATCGTTAGCCAACACTTCTCAGAAATCCAAAAAAATGACGAGCTTGAAATTATAACACACCCGCAAAGACTTTACAACATAGACGAAAAGGGATGTCGGTTGACTGTTCATAATCAACAGACTGTTCTAGCACAAAGAGGAGCTCGACGAGTCCATTTAATAGCGCCAGAGCATGCTCAAAATGTCACGATCGCAATGTGTGTCAATGCTGTCGGGACCGCTATTCCACCGATGATAATATTTAAAGGACAGAGGCAGAAACCTGAATTTAGTGACAATTTACCCGCGGGGAGTTTCGTGAAGATGTCAGCAAAAGGGAGCATGACAACTGAACTATTCGTGGAGTTCATTAAACATTTGGCAAAATATAAGACTCAAGGAAAAATTTTGTTGATCTTCGATGGAGCGTCATCGCACTTAGATTACACGATCGTTGAGGAAGCAGACCGGCATGACATAGTCCTTTATTGTCTCCCGAGTAATACTACGCACGAGCTGCAACCTCTGGACAAATCTGTGAATAAGTCTTTTGAACATTATTGGGATCAAGAGGTTTTAAGATACATGTATCAAAATCCTGAAAGACGCATAACGAAAACcagttttaatacaattttcacAAAGGTGTGGTCACAGTGTTTGACTCACGACAATATAGTAAACGGGTTTCGAGCTACGGGCTTGTACCCTTTCAACCCTGACATATTACCTGACGAGGCATTTGCTCCATCAATTTTAACAGAGCTGCCTCCACCAACAGAACCCAGCGCTTTAGTAGGCTCAAACACAGATCATCCAGATAATTATACTGTCAATCAGCCAGAAGAACAGCTTCGAAACGAGGATGATTCTCAATCTCATTTGGAGCAGGTTCCTGATTTACCCGAGAAAAGTCCTGCTCAAAGCGCCATGGATCTAAATAATTTGTCGGTCTTAACTAACCAATAG
- Protein Sequence
- MPPRRAPWTQENLRSAMAAVQRGQLTQRGAAERYNIPRRTLRNHLKSGNTMRCLGRRSIMTEAQECDLVNRIIRFANIGMPLTPKLIRRQAFIFCEKYELKHNFNADIGLAGKDWLKMFLKRHPEISKRKAQFMNPARAQKLNRPIVSQHFSEIQKNDELEIITHPQRLYNIDEKGCRLTVHNQQTVLAQRGARRVHLIAPEHAQNVTIAMCVNAVGTAIPPMIIFKGQRQKPEFSDNLPAGSFVKMSAKGSMTTELFVEFIKHLAKYKTQGKILLIFDGASSHLDYTIVEEADRHDIVLYCLPSNTTHELQPLDKSVNKSFEHYWDQEVLRYMYQNPERRITKTSFNTIFTKVWSQCLTHDNIVNGFRATGLYPFNPDILPDEAFAPSILTELPPPTEPSALVGSNTDHPDNYTVNQPEEQLRNEDDSQSHLEQVPDLPEKSPAQSAMDLNNLSVLTNQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00276238;
- 90% Identity
- iTF_00276238;
- 80% Identity
- -