Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.074 5.5 8.1 0.9 2 23 171 193 170 193 0.80

2 6 0.0058 0.43 11.6 0.5 2 23 200 221 199 221 0.91

3 6 1.3e-06 0.0001 23.0 4.2 1 23 226 248 226 248 0.98

4 6 0.00016 0.012 16.4 4.3 1 23 254 277 254 277 0.98

5 6 0.00053 0.04 14.8 2.2 1 23 283 305 283 305 0.96

6 6 0.006 0.45 11.5 8.5 1 23 311 334 311 334 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.074	5.5	8.1	0.9	2	23	171	193	170	193	0.80
2	6	0.0058	0.43	11.6	0.5	2	23	200	221	199	221	0.91
3	6	1.3e-06	0.0001	23.0	4.2	1	23	226	248	226	248	0.98
4	6	0.00016	0.012	16.4	4.3	1	23	254	277	254	277	0.98
5	6	0.00053	0.04	14.8	2.2	1	23	283	305	283	305	0.96
6	6	0.006	0.45	11.5	8.5	1	23	311	334	311	334	0.96

Coding Sequence: ATGGAATCAACAAGTGTTATAGACTCgacttttaatatgaaaacattGTGTAGAATTTGTTTAACAACTAATGATGACATGGACCAAATATTTACCGaaaccaataataatttaatagataatatcGAATTTTGTACTGGAGTTTTGctTAAACAAACATATGGTCTGCCAACACAAATATGTAAAACATGTACAGATAATTTATCCACCgcatataaattcaaaatattgtgtCTAACAACCGAAGAAGCCCTCCAAAAtctaataaagagtattaaaACTGAATTTTGTGATGATGATACAAATGATGATTATGTTGATTATAATTTGAATCTCAATTGTGATGATAATAAGATTTTAAGGGAAAATTTGCAAGAAGAGACTAATTTAAGGCCAAGAAAAGTTAAAATCAATAAGAGacAACAACAAGAAATAACTAAAAGGAAAAAACGTGGAccatacaaaaagaaaaatccaCCACGaattcgaaaatataaattcacaaGGCTAACCTGTGAAACCTGTGGACTAAAATTCTCATCTAAACAAGAGTCTGATGAACATAGAAAATTGTTTCATGCTGAGAATATAAGCTGGATATGTGAAatatGCGGCAAAACATTTCCGTACCTCGGCTCCCATTATACTCATGTCAAATCACATATGCCGCCCCGGTACTCCTGCGCACATTGTGACTACAGCTGTTCAACTAAGAGCGACTTGGAGAAACACCTCAGGATACACTTAGgtataaaaaagtacaaatgcACCAAATGCCAATCATCATTCACGACGATTTCGAACCTGCACGACCACGAGCGCCGTCAGCACCAGCGTTTGAAACGCTTCCACTGCGCCTTGTGTGACTTGACCTTCTACGATAGGACCAAATTGAATAGACACGTCGATTCACATAATAGTGTTAAACGtttttcctGTGACATATGCCATTCGAGTTTCACACGGCGATGCCATTGGAAAAAACATCTGGAAAAACAACATAATGTATCCATTCCCGCCCAAAGACCTGGAAGACAAAAGACTAATATtttaatcgaacccactgcgACCTCCACTTTGAATGAACCTTAA
Protein Sequence: MESTSVIDSTFNMKTLCRICLTTNDDMDQIFTETNNNLIDNIEFCTGVLLKQTYGLPTQICKTCTDNLSTAYKFKILCLTTEEALQNLIKSIKTEFCDDDTNDDYVDYNLNLNCDDNKILRENLQEETNLRPRKVKINKRQQQEITKRKKRGPYKKKNPPRIRKYKFTRLTCETCGLKFSSKQESDEHRKLFHAENISWICEICGKTFPYLGSHYTHVKSHMPPRYSCAHCDYSCSTKSDLEKHLRIHLGIKKYKCTKCQSSFTTISNLHDHERRQHQRLKRFHCALCDLTFYDRTKLNRHVDSHNSVKRFSCDICHSSFTRRCHWKKHLEKQHNVSIPAQRPGRQKTNILIEPTATSTLNEP

Sequence clustering based on sequence similarity using MMseqs2