Basic Information

Insect: Heliconius sara
Gene Symbol: -
Assembly: GCA_917862395.2
Location: OU860798.1:8830217-8831405[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.00093 0.069 14.1 0.7 3 23 164 184 163 184 0.97

2 7 0.0038 0.28 12.1 1.8 1 19 188 206 188 209 0.94

3 7 0.0026 0.19 12.7 0.1 2 23 226 246 226 246 0.98

4 7 0.00015 0.011 16.5 1.4 1 23 252 275 252 275 0.94

5 7 0.00039 0.029 15.2 4.2 1 23 281 303 281 304 0.96

6 7 5.8e-06 0.00043 21.0 2.5 1 23 310 332 310 332 0.98

7 7 0.0004 0.029 15.2 7.3 1 23 338 360 338 360 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.00093	0.069	14.1	0.7	3	23	164	184	163	184	0.97
2	7	0.0038	0.28	12.1	1.8	1	19	188	206	188	209	0.94
3	7	0.0026	0.19	12.7	0.1	2	23	226	246	226	246	0.98
4	7	0.00015	0.011	16.5	1.4	1	23	252	275	252	275	0.94
5	7	0.00039	0.029	15.2	4.2	1	23	281	303	281	304	0.96
6	7	5.8e-06	0.00043	21.0	2.5	1	23	310	332	310	332	0.98
7	7	0.0004	0.029	15.2	7.3	1	23	338	360	338	360	0.98

Sequence Information

Coding Sequence: atgagTTATAAAGATCATTGTAGAACATGTTTGAGTAGCGGCAAAGAAATGCGTCACGTCCAATCAATTATATCGATTGCTGGAGACAGCGTCCGCTTATcggatatatttgaaaaattttataattacactATACCCCCAGATGATTTTTTACCTGATAGAATTTGTATAAACTGTGTTCATCAGTTAACAGTATCATACtcatttaaaaaactaattgaAGCTAGCGCCAAAACATTAGCTAAAAGCATAAATTTAACGGATTCAACTAGTGATAACGATGCCACTTTTGATTCTGACGATCTTAAGCctataaaactattacaaaagaatcaaagaaaaaatatactaaaaggGCAAACGGAACCTAAATtactagaatataaattattattttgtgtagaATGTAAGGCAGAATTCCATTCAGTAAAATCTCTTTATGACCACTGTGTTACCAATCACATTGTGAAGTCAGCTGTGGGTCGAGATTGTGATTACTGTAATGAAAAATTTGACGACTTTCGTTCATTAGTATTACACAGAAGATTACATATAAAACCATTTATTTGCGAGAATTGTTGGGAAGGTTTTTATAATTCAGATGACCTAAAACATCATTCATGTCAGcctaaatcaaaaaataaggACAGATATAAATATGAGAAAACAATGAGACAGTGTGATCAATGCGGCAAGTCCTATCCTCCAGGATATATAAGGATACACATGTTAACACACAGCAATATCTTAGCCTACAGTTGTAAATTTTGTCCTAAAAAGTTTAAAGTGCCTGGCAGCCTACATTCACATGTACTCTGGAATCATAAAAGAACTAGAAATCATAAATGTGAAGTTTGCAATGCAACATTTATATCATCGAGTTCTCGTAGTTCCCATATTAGGAAACATCACCTGAAAGAGAAGAAATACAGCTGTGATAGTTGTGAAAAGCGATTTTTCTCAAAATCTGAATTGCAAAGACATACTTTAACTCATACTGGGGTCAAAAATTTTCACTGCCACTTGTGTGACAAGTCTTACCAAACTAAACATGGCTTGAATGTACATTTGAAGTCACATTCTAATGTCACtatgaatgttttaaatttataa
Protein Sequence: MSYKDHCRTCLSSGKEMRHVQSIISIAGDSVRLSDIFEKFYNYTIPPDDFLPDRICINCVHQLTVSYSFKKLIEASAKTLAKSINLTDSTSDNDATFDSDDLKPIKLLQKNQRKNILKGQTEPKLLEYKLLFCVECKAEFHSVKSLYDHCVTNHIVKSAVGRDCDYCNEKFDDFRSLVLHRRLHIKPFICENCWEGFYNSDDLKHHSCQPKSKNKDRYKYEKTMRQCDQCGKSYPPGYIRIHMLTHSNILAYSCKFCPKKFKVPGSLHSHVLWNHKRTRNHKCEVCNATFISSSSRSSHIRKHHLKEKKYSCDSCEKRFFSKSELQRHTLTHTGVKNFHCHLCDKSYQTKHGLNVHLKSHSNVTMNVLNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00458360;
90% Identity: iTF_00780572;
80% Identity: -