Hsar006272.1
Basic Information
- Insect
- Heliconius sara
- Gene Symbol
- -
- Assembly
- GCA_917862395.2
- Location
- OU860785.2:16267062-16274977[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.9 2.9e+02 2.6 0.2 1 20 272 291 272 295 0.88 2 10 0.51 38 5.4 1.2 1 23 327 349 327 349 0.96 3 10 0.0051 0.38 11.7 2.0 1 23 401 424 401 424 0.95 4 10 6.4e-06 0.00047 20.9 4.3 2 23 429 450 428 450 0.97 5 10 0.067 5 8.2 1.0 2 23 458 478 458 478 0.96 6 10 6.9e-05 0.0051 17.6 1.3 1 21 484 504 484 509 0.94 7 10 0.0011 0.084 13.8 0.6 1 23 517 540 517 540 0.94 8 10 7.4e-05 0.0055 17.5 0.2 1 23 546 569 546 569 0.97 9 10 0.00012 0.0091 16.8 1.7 1 23 579 601 579 601 0.94 10 10 2.9e-05 0.0021 18.8 1.4 2 23 608 630 607 630 0.96
Sequence Information
- Coding Sequence
- atggAGCAAGATGTGGACACTGGCTACAGGACTTTATGTTGCACTTGTTTAAGCTCAGATAGGAATGTTACGTCTATAAATGGATTGACTTCTATATATCAGATATTTAGATTGATTATGTATGATTATGCCGGCGACCGGtttGGTGATTCAATAATAGAATTAGATCAAGTAGTGTGTTGGGAGTGCCTCGCTATAATGAAGAAATTTGCGAGATTTAAACGTCAAGTCCACAATGCACAAGAACATTTACGAGTATTGGCTATAAGTCAATCTCAAGAGACCATGGACCATACATACATGTCGCAAACACTATCATCATTAGAATGCGTAATAAAAACTGATTATGATAAAGTAATAGCGaattatacacaaaatattgATGATAGTGTTATATTAGAAAAAGATTGGCATCCTCAGTACATTACTGTGACAAcagcacaaaatataaaaaatgaaagctACGATGTGAGCCGAGCTTTGACTGATCATATCAGTTTGGGTATAGAAGATCAGGTTATTGAAGttccaGAAATGGTATTAGACAATACAATGACTGGTGTTATGTCTCACATAGTGGTTGGAACTGACGCAATAGTCAGTCCCTTTACAGGGGTTAAGGGGGAATTACCGGAATTGACTATCGAccCAACAACAAATCCGGATACGGTTATAATAAcgcaaaaatgtaaaaatgataCAATATCTCACAATGATTTGAAATCTGGATATAACACTGTATTCATGTCTGAAGCTGAAATGCTCGAGgctagagaAGAAGCAAAAACAAAAGTTCAATACACGAGTACGGCGTTTAAATGTGAATTGTGTATAATAGGTTTTTACACACAACAGCAAGTTGAAGATCATTTTGTGGCTATGCATAGAAAGaaaccAGGCCAACTAGCATGCAAAGTATGCTACGTATACATACCGGAGGACAAACTGAACGAACACACGGACAGCCACTACTGGAGATATGTATGTAAGCTGTGCAATAAATACGAGACAAGCAGTAAGTTGATGAGTTTACATGTAAAATCTCACATGGCGAAGACGCGGCCCAACGCTGTTATACAGATTGGTGATGATGATGTGAAGggcagaaagaaaaaaaaagaaccagaaatagatgaaataaaagaaaaaaagaacccCCCTACTCTAAGGAAACTATTGTCCAAAACGACAATAGTTGGCTACAAATGTTTGGAATGCGATATGTTCTTCAAAAATTCCCGCGCGCGCAAGAATCACGTCGACAGATTTCATAGAGAAGGCTTGCAATGTGATCATTGTAAAAAGAGATTTGTAAATAGAACCACTTTGACAACGCATATGAGACTACACGAAGGTCCACTGCCGAGAGAGGAATGTCCCATCTGTCACAAAATGGTCAGATCGATACAAATCAAGTATCACATACAAAGACATCAGAACACGAGTAAATACGAGTGCAGAGATTGTAACAAGGTGTTCAGCCATCTTGCCACGTATCAAGCTCATCTCAAGTATTCCAGGCCCCATGCGTCCGATCAGGTTTTTAAgTTCCCGTGTCCAATGTGCAATAAGGGTTATCCGACAAAACAGAGTATGCAGGACCATTTTAACTATCAACATTTGGGGAAAACTACACACAAATGTCCTGTGTGTAATAagCCAATAGCGTCTCGAGCTAACGTAGAGAAACACATGATGCGAGTACACGGCGAGAAGAAACCGAAACCCAGAAACCACGTCTGTAAAACGTGCAAGAAGGGTTTCAcggatAAAAAAGCTCTGACACAACACGAAGTGATTCATTCTAAGGAAAGACCTTTAACTTGTGACATTTGTCAACAAAGCTTCAAACAGAAGGCCTCTCTGTACACGCACAGGAAGAGGGTACACAAAGTGTTCCCGGCGAAACGAATGGTCGAGTTTATGGAAGTCAAGAACCAAAATGTATGA
- Protein Sequence
- MEQDVDTGYRTLCCTCLSSDRNVTSINGLTSIYQIFRLIMYDYAGDRFGDSIIELDQVVCWECLAIMKKFARFKRQVHNAQEHLRVLAISQSQETMDHTYMSQTLSSLECVIKTDYDKVIANYTQNIDDSVILEKDWHPQYITVTTAQNIKNESYDVSRALTDHISLGIEDQVIEVPEMVLDNTMTGVMSHIVVGTDAIVSPFTGVKGELPELTIDPTTNPDTVIITQKCKNDTISHNDLKSGYNTVFMSEAEMLEAREEAKTKVQYTSTAFKCELCIIGFYTQQQVEDHFVAMHRKKPGQLACKVCYVYIPEDKLNEHTDSHYWRYVCKLCNKYETSSKLMSLHVKSHMAKTRPNAVIQIGDDDVKGRKKKKEPEIDEIKEKKNPPTLRKLLSKTTIVGYKCLECDMFFKNSRARKNHVDRFHREGLQCDHCKKRFVNRTTLTTHMRLHEGPLPREECPICHKMVRSIQIKYHIQRHQNTSKYECRDCNKVFSHLATYQAHLKYSRPHASDQVFKFPCPMCNKGYPTKQSMQDHFNYQHLGKTTHKCPVCNKPIASRANVEKHMMRVHGEKKPKPRNHVCKTCKKGFTDKKALTQHEVIHSKERPLTCDICQQSFKQKASLYTHRKRVHKVFPAKRMVEFMEVKNQNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00774740;
- 90% Identity
- iTF_00774740;
- 80% Identity
- -